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haroldthimbleby / improving-science

Paper, supplementary material and all data for a paper "Improving science that uses code"
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models/run fails #4

Closed khinsen closed 1 year ago

khinsen commented 1 year ago

The script run in directory models fails:

./run: line 6: .: scan: file not found
haroldthimbleby commented 1 year ago

Mea culpa! Will fix asap; its in progs/scanFrom Harold's iPhoneThe Patron Saint of copying people into emails is St Francis of a CC.   Too brief? Here's why: https://medium.com/virtual-teams-for-systemic-change/the-email-charter-an-idea-worth-spreading-688b8940f892On 20 Feb 2023, at 17:58, Konrad Hinsen @.***> wrote: The script run in directory models fails: ./run: line 6: .: scan: file not found

—Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you are subscribed to this thread.Message ID: @.***>

khinsen commented 1 year ago

The following patch seems to fix this issue:

@@ -3,7 +3,7 @@ rm -rf "git-covid-sim"
 git clone "http://github.com/mrc-ide/covid-sim" "git-covid-sim"

 . ../generated/allGitRepos.sh
-. scan > ../generated/repos.tex
+./scan > ../generated/repos.tex

 # check that PostoperativeOutcomes_RiskNet README.md has not been updated
 # otherwise sections in the paper need fixing!