harrelfe / Hmisc

Harrell Miscellaneous
Other
208 stars 81 forks source link

`noprint` option of `rcspline.plot()` doesn't work #79

Closed CorradoLanera closed 6 years ago

CorradoLanera commented 6 years ago
data('pbc', package = 'survival')

Hmisc::rcspline.plot(
  x       = pbc$age,
  y       = pbc$time,
  event   = pbc$status == 2,
  noprint = TRUE
)
#> Warning in coxph.fit(cbind(x, xx, adj), cbind(y, event), strata = NULL, :
#> Loglik converged before variable 2 ; beta may be infinite.

#> 
#> cbind(xe, lower, upper)
#> 
#>              xe                    
#>   [1,] 32.50350 -1.6039608 6.020901
#>   [2,] 32.56624 -1.6070568 6.032522
#>   [3,] 32.62898 -1.6101528 6.044144
#>   [4,] 32.69172 -1.6132488 6.055766
#>   [5,] 32.75446 -1.6163448 6.067387
#>   [6,] 32.81720 -1.6194408 6.079009
#>   [7,] 32.87994 -1.6225368 6.090631
#>   [8,] 32.94268 -1.6256328 6.102252
#>   [9,] 33.00542 -1.6287288 6.113874
#>  [10,] 33.06815 -1.6318248 6.125496
#>  [11,] 33.13089 -1.6349208 6.137117
#>  [12,] 33.19363 -1.6380169 6.148739
#>  [13,] 33.25637 -1.6411129 6.160361
#>  [14,] 33.31911 -1.6442089 6.171983
#>  [15,] 33.38185 -1.6473049 6.183604
#>  [16,] 33.44459 -1.6504009 6.195226
#>  [17,] 33.50733 -1.6534969 6.206848
#>  [18,] 33.57007 -1.6565929 6.218469
#>  [19,] 33.63281 -1.6596889 6.230091
#>  [20,] 33.69555 -1.6627849 6.241713
#>  [21,] 33.75828 -1.6658809 6.253334
#>  [22,] 33.82102 -1.6689769 6.264956
#>  [23,] 33.88376 -1.6720729 6.276578
#>  [24,] 33.94650 -1.6751684 6.288199
#>  [25,] 34.00924 -1.6782629 6.299819
#>  [26,] 34.07198 -1.6813557 6.311438
#>  [27,] 34.13472 -1.6844462 6.323054
#>  [28,] 34.19746 -1.6875339 6.334667
#>  [29,] 34.26020 -1.6906180 6.346277
#>  [30,] 34.32294 -1.6936980 6.357883
#>  [31,] 34.38567 -1.6967733 6.369483
#>  [32,] 34.44841 -1.6998433 6.381079
#>  [33,] 34.51115 -1.7029073 6.392668
#>  [34,] 34.57389 -1.7059647 6.404251
#>  [35,] 34.63663 -1.7090149 6.415827
#>  [36,] 34.69937 -1.7120573 6.427395
#>  [37,] 34.76211 -1.7150914 6.438954
#>  [38,] 34.82485 -1.7181164 6.450505
#>  [39,] 34.88759 -1.7211317 6.462045
#>  [40,] 34.95033 -1.7241368 6.473576
#>  [41,] 35.01307 -1.7271311 6.485095
#>  [42,] 35.07580 -1.7301138 6.496603
#>  [43,] 35.13854 -1.7330845 6.508099
#>  [44,] 35.20128 -1.7360425 6.519582
#>  [45,] 35.26402 -1.7389871 6.531051
#>  [46,] 35.32676 -1.7419178 6.542507
#>  [47,] 35.38950 -1.7448340 6.553948
#>  [48,] 35.45224 -1.7477350 6.565374
#>  [49,] 35.51498 -1.7506203 6.576784
#>  [50,] 35.57772 -1.7534891 6.588177
#>  [51,] 35.64046 -1.7563410 6.599554
#>  [52,] 35.70320 -1.7591753 6.610912
#>  [53,] 35.76593 -1.7619913 6.622253
#>  [54,] 35.82867 -1.7647885 6.633574
#>  [55,] 35.89141 -1.7675663 6.644876
#>  [56,] 35.95415 -1.7703240 6.656158
#>  [57,] 36.01689 -1.7730610 6.667419
#>  [58,] 36.07963 -1.7757767 6.678659
#>  [59,] 36.14237 -1.7784706 6.689876
#>  [60,] 36.20511 -1.7811419 6.701071
#>  [61,] 36.26785 -1.7837901 6.712243
#>  [62,] 36.33059 -1.7864146 6.723391
#>  [63,] 36.39333 -1.7890148 6.734515
#>  [64,] 36.45606 -1.7915900 6.745613
#>  [65,] 36.51880 -1.7941396 6.756686
#>  [66,] 36.58154 -1.7966630 6.767732
#>  [67,] 36.64428 -1.7991597 6.778752
#>  [68,] 36.70702 -1.8016289 6.789744
#>  [69,] 36.76976 -1.8040702 6.800708
#>  [70,] 36.83250 -1.8064828 6.811643
#>  [71,] 36.89524 -1.8088662 6.822548
#>  [72,] 36.95798 -1.8112197 6.833424
#>  [73,] 37.02072 -1.8135428 6.844269
#>  [74,] 37.08346 -1.8158348 6.855083
#>  [75,] 37.14619 -1.8180952 6.865865
#>  [76,] 37.20893 -1.8203232 6.876615
#>  [77,] 37.27167 -1.8225184 6.887332
#>  [78,] 37.33441 -1.8246801 6.898015
#>  [79,] 37.39715 -1.8268076 6.908663
#>  [80,] 37.45989 -1.8289005 6.919277
#>  [81,] 37.52263 -1.8309580 6.929855
#>  [82,] 37.58537 -1.8329795 6.940397
#>  [83,] 37.64811 -1.8349646 6.950903
#>  [84,] 37.71085 -1.8369124 6.961371
#>  [85,] 37.77359 -1.8388225 6.971801
#>  [86,] 37.83632 -1.8406943 6.982193
#>  [87,] 37.89906 -1.8425270 6.992545
#>  [88,] 37.96180 -1.8443202 7.002858
#>  [89,] 38.02454 -1.8460732 7.013131
#>  [90,] 38.08728 -1.8477854 7.023362
#>  [91,] 38.15002 -1.8494562 7.033552
#>  [92,] 38.21276 -1.8510850 7.043699
#>  [93,] 38.27550 -1.8526712 7.053804
#>  [94,] 38.33824 -1.8542142 7.063865
#>  [95,] 38.40098 -1.8557133 7.073883
#>  [96,] 38.46372 -1.8571681 7.083855
#>  [97,] 38.52645 -1.8585778 7.093783
#>  [98,] 38.58919 -1.8599418 7.103664
#>  [99,] 38.65193 -1.8612597 7.113499
#> [100,] 38.71467 -1.8625307 7.123288
#> [101,] 38.77741 -1.8637542 7.133028
#> [102,] 38.84015 -1.8649298 7.142720
#> [103,] 38.90289 -1.8660566 7.152363
#> [104,] 38.96563 -1.8671343 7.161957
#> [105,] 39.02837 -1.8681621 7.171501
#> [106,] 39.09111 -1.8691395 7.180994
#> [107,] 39.15385 -1.8700658 7.190436
#> [108,] 39.21658 -1.8709405 7.199826
#> [109,] 39.27932 -1.8717629 7.209163
#> [110,] 39.34206 -1.8725326 7.218447
#> [111,] 39.40480 -1.8732488 7.227678
#> [112,] 39.46754 -1.8739109 7.236854
#> [113,] 39.53028 -1.8745185 7.245976
#> [114,] 39.59302 -1.8750708 7.255042
#> [115,] 39.65576 -1.8755673 7.264052
#> [116,] 39.71850 -1.8760074 7.273005
#> [117,] 39.78124 -1.8763905 7.281901
#> [118,] 39.84397 -1.8767160 7.290739
#> [119,] 39.90671 -1.8769834 7.299519
#> [120,] 39.96945 -1.8771919 7.308239
#> [121,] 40.03219 -1.8773411 7.316900
#> [122,] 40.09493 -1.8774303 7.325501
#> [123,] 40.15767 -1.8774590 7.334041
#> [124,] 40.22041 -1.8774266 7.342519
#> [125,] 40.28315 -1.8773324 7.350936
#> [126,] 40.34589 -1.8771759 7.359289
#> [127,] 40.40863 -1.8769565 7.367580
#> [128,] 40.47137 -1.8766737 7.375807
#> [129,] 40.53410 -1.8763268 7.383969
#> [130,] 40.59684 -1.8759152 7.392067
#> [131,] 40.65958 -1.8754384 7.400099
#> [132,] 40.72232 -1.8748958 7.408065
#> [133,] 40.78506 -1.8742868 7.415964
#> [134,] 40.84780 -1.8736108 7.423796
#> [135,] 40.91054 -1.8728672 7.431560
#> [136,] 40.97328 -1.8720556 7.439255
#> [137,] 41.03602 -1.8711752 7.446882
#> [138,] 41.09876 -1.8702255 7.454438
#> [139,] 41.16150 -1.8692060 7.461925
#> [140,] 41.22423 -1.8681160 7.469341
#> [141,] 41.28697 -1.8669550 7.476685
#> [142,] 41.34971 -1.8657225 7.483958
#> [143,] 41.41245 -1.8644177 7.491158
#> [144,] 41.47519 -1.8630403 7.498285
#> [145,] 41.53793 -1.8615896 7.505338
#> [146,] 41.60067 -1.8600650 7.512318
#> [147,] 41.66341 -1.8584660 7.519222
#> [148,] 41.72615 -1.8567920 7.526051
#> [149,] 41.78889 -1.8550424 7.532804
#> [150,] 41.85163 -1.8532167 7.539481
#> [151,] 41.91436 -1.8513144 7.546080
#> [152,] 41.97710 -1.8493348 7.552602
#> [153,] 42.03984 -1.8472774 7.559046
#> [154,] 42.10258 -1.8451416 7.565411
#> [155,] 42.16532 -1.8429269 7.571697
#> [156,] 42.22806 -1.8406328 7.577903
#> [157,] 42.29080 -1.8382587 7.584028
#> [158,] 42.35354 -1.8358040 7.590073
#> [159,] 42.41628 -1.8332681 7.596036
#> [160,] 42.47902 -1.8306506 7.601917
#> [161,] 42.54176 -1.8279509 7.607715
#> [162,] 42.60449 -1.8251684 7.613430
#> [163,] 42.66723 -1.8223026 7.619062
#> [164,] 42.72997 -1.8193530 7.624609
#> [165,] 42.79271 -1.8163189 7.630072
#> [166,] 42.85545 -1.8132000 7.635449
#> [167,] 42.91819 -1.8099956 7.640740
#> [168,] 42.98093 -1.8067052 7.645945
#> [169,] 43.04367 -1.8033282 7.651063
#> [170,] 43.10641 -1.7998642 7.656093
#> [171,] 43.16915 -1.7963126 7.661035
#> [172,] 43.23189 -1.7926729 7.665889
#> [173,] 43.29462 -1.7889446 7.670654
#> [174,] 43.35736 -1.7851271 7.675329
#> [175,] 43.42010 -1.7812199 7.679914
#> [176,] 43.48284 -1.7772224 7.684408
#> [177,] 43.54558 -1.7731343 7.688812
#> [178,] 43.60832 -1.7689550 7.693123
#> [179,] 43.67106 -1.7646839 7.697342
#> [180,] 43.73380 -1.7603205 7.701469
#> [181,] 43.79654 -1.7558644 7.705502
#> [182,] 43.85928 -1.7513150 7.709442
#> [183,] 43.92202 -1.7466718 7.713288
#> [184,] 43.98475 -1.7419343 7.717038
#> [185,] 44.04749 -1.7371026 7.720694
#> [186,] 44.11023 -1.7321785 7.724256
#> [187,] 44.17297 -1.7271641 7.727725
#> [188,] 44.23571 -1.7220615 7.731103
#> [189,] 44.29845 -1.7168730 7.734390
#> [190,] 44.36119 -1.7116007 7.737588
#> [191,] 44.42393 -1.7062467 7.740699
#> [192,] 44.48667 -1.7008133 7.743722
#> [193,] 44.54941 -1.6953025 7.746660
#> [194,] 44.61215 -1.6897165 7.749514
#> [195,] 44.67488 -1.6840575 7.752285
#> [196,] 44.73762 -1.6783275 7.754974
#> [197,] 44.80036 -1.6725288 7.757582
#> [198,] 44.86310 -1.6666635 7.760110
#> [199,] 44.92584 -1.6607336 7.762560
#> [200,] 44.98858 -1.6547413 7.764933
#> [201,] 45.05132 -1.6486888 7.767230
#> [202,] 45.11406 -1.6425781 7.769452
#> [203,] 45.17680 -1.6364114 7.771600
#> [204,] 45.23954 -1.6301908 7.773676
#> [205,] 45.30227 -1.6239183 7.775680
#> [206,] 45.36501 -1.6175961 7.777614
#> [207,] 45.42775 -1.6112263 7.779478
#> [208,] 45.49049 -1.6048110 7.781275
#> [209,] 45.55323 -1.5983522 7.783005
#> [210,] 45.61597 -1.5918521 7.784669
#> [211,] 45.67871 -1.5853126 7.786268
#> [212,] 45.74145 -1.5787360 7.787804
#> [213,] 45.80419 -1.5721242 7.789277
#> [214,] 45.86693 -1.5654793 7.790690
#> [215,] 45.92967 -1.5588034 7.792042
#> [216,] 45.99240 -1.5520986 7.793335
#> [217,] 46.05514 -1.5453668 7.794569
#> [218,] 46.11788 -1.5386102 7.795747
#> [219,] 46.18062 -1.5318307 7.796870
#> [220,] 46.24336 -1.5250305 7.797937
#> [221,] 46.30610 -1.5182115 7.798951
#> [222,] 46.36884 -1.5113757 7.799912
#> [223,] 46.43158 -1.5045252 7.800822
#> [224,] 46.49432 -1.4976620 7.801681
#> [225,] 46.55706 -1.4907881 7.802491
#> [226,] 46.61980 -1.4839055 7.803252
#> [227,] 46.68253 -1.4770163 7.803967
#> [228,] 46.74527 -1.4701223 7.804635
#> [229,] 46.80801 -1.4632256 7.805257
#> [230,] 46.87075 -1.4563282 7.805836
#> [231,] 46.93349 -1.4494321 7.806371
#> [232,] 46.99623 -1.4425392 7.806864
#> [233,] 47.05897 -1.4356515 7.807316
#> [234,] 47.12171 -1.4287709 7.807728
#> [235,] 47.18445 -1.4218995 7.808100
#> [236,] 47.24719 -1.4150392 7.808435
#> [237,] 47.30993 -1.4081919 7.808732
#> [238,] 47.37266 -1.4013596 7.808993
#> [239,] 47.43540 -1.3945443 7.809220
#> [240,] 47.49814 -1.3877477 7.809411
#> [241,] 47.56088 -1.3809720 7.809570
#> [242,] 47.62362 -1.3742190 7.809697
#> [243,] 47.68636 -1.3674907 7.809792
#> [244,] 47.74910 -1.3607889 7.809857
#> [245,] 47.81184 -1.3541156 7.809892
#> [246,] 47.87458 -1.3474727 7.809900
#> [247,] 47.93732 -1.3408621 7.809880
#> [248,] 48.00006 -1.3342857 7.809833
#> [249,] 48.06279 -1.3277454 7.809761
#> [250,] 48.12553 -1.3212431 7.809664
#> [251,] 48.18827 -1.3147807 7.809544
#> [252,] 48.25101 -1.3083601 7.809401
#> [253,] 48.31375 -1.3019832 7.809236
#> [254,] 48.37649 -1.2956518 7.809050
#> [255,] 48.43923 -1.2893679 7.808844
#> [256,] 48.50197 -1.2831333 7.808620
#> [257,] 48.56471 -1.2769499 7.808377
#> [258,] 48.62745 -1.2708195 7.808117
#> [259,] 48.69019 -1.2647441 7.807841
#> [260,] 48.75292 -1.2587255 7.807550
#> [261,] 48.81566 -1.2527656 7.807244
#> [262,] 48.87840 -1.2468663 7.806925
#> [263,] 48.94114 -1.2410294 7.806593
#> [264,] 49.00388 -1.2352567 7.806249
#> [265,] 49.06662 -1.2295502 7.805895
#> [266,] 49.12936 -1.2239117 7.805531
#> [267,] 49.19210 -1.2183430 7.805157
#> [268,] 49.25484 -1.2128461 7.804776
#> [269,] 49.31758 -1.2074227 7.804388
#> [270,] 49.38032 -1.2020749 7.803993
#> [271,] 49.44305 -1.1968043 7.803593
#> [272,] 49.50579 -1.1916129 7.803189
#> [273,] 49.56853 -1.1865026 7.802781
#> [274,] 49.63127 -1.1814751 7.802371
#> [275,] 49.69401 -1.1765325 7.801959
#> [276,] 49.75675 -1.1716765 7.801546
#> [277,] 49.81949 -1.1669090 7.801133
#> [278,] 49.88223 -1.1622319 7.800722
#> [279,] 49.94497 -1.1576471 7.800312
#> [280,] 50.00771 -1.1531565 7.799906
#> [281,] 50.07045 -1.1487619 7.799503
#> [282,] 50.13318 -1.1444652 7.799105
#> [283,] 50.19592 -1.1402684 7.798712
#> [284,] 50.25866 -1.1361732 7.798327
#> [285,] 50.32140 -1.1321817 7.797949
#> [286,] 50.38414 -1.1282958 7.797579
#> [287,] 50.44688 -1.1245173 7.797220
#> [288,] 50.50962 -1.1208481 7.796870
#> [289,] 50.57236 -1.1172903 7.796532
#> [290,] 50.63510 -1.1138457 7.796207
#> [291,] 50.69784 -1.1105162 7.795895
#> [292,] 50.76058 -1.1073039 7.795597
#> [293,] 50.82331 -1.1042107 7.795315
#> [294,] 50.88605 -1.1012385 7.795049
#> [295,] 50.94879 -1.0983893 7.794801
#> [296,] 51.01153 -1.0956651 7.794571
#> [297,] 51.07427 -1.0930668 7.794361
#> [298,] 51.13701 -1.0905930 7.794170
#> [299,] 51.19975 -1.0882417 7.793998
#> [300,] 51.26249 -1.0860110 7.793846
#> [301,] 51.32523 -1.0838991 7.793714
#> [302,] 51.38797 -1.0819042 7.793602
#> [303,] 51.45070 -1.0800243 7.793509
#> [304,] 51.51344 -1.0782575 7.793437
#> [305,] 51.57618 -1.0766021 7.793384
#> [306,] 51.63892 -1.0750562 7.793352
#> [307,] 51.70166 -1.0736180 7.793341
#> [308,] 51.76440 -1.0722855 7.793349
#> [309,] 51.82714 -1.0710570 7.793379
#> [310,] 51.88988 -1.0699306 7.793429
#> [311,] 51.95262 -1.0689045 7.793501
#> [312,] 52.01536 -1.0679769 7.793593
#> [313,] 52.07810 -1.0671459 7.793706
#> [314,] 52.14083 -1.0664096 7.793841
#> [315,] 52.20357 -1.0657663 7.793998
#> [316,] 52.26631 -1.0652142 7.794176
#> [317,] 52.32905 -1.0647513 7.794375
#> [318,] 52.39179 -1.0643759 7.794597
#> [319,] 52.45453 -1.0640861 7.794841
#> [320,] 52.51727 -1.0638801 7.795107
#> [321,] 52.58001 -1.0637561 7.795395
#> [322,] 52.64275 -1.0637121 7.795706
#> [323,] 52.70549 -1.0637464 7.796039
#> [324,] 52.76823 -1.0638572 7.796395
#> [325,] 52.83096 -1.0640425 7.796774
#> [326,] 52.89370 -1.0643005 7.797175
#> [327,] 52.95644 -1.0646294 7.797600
#> [328,] 53.01918 -1.0650273 7.798048
#> [329,] 53.08192 -1.0654924 7.798519
#> [330,] 53.14466 -1.0660227 7.799014
#> [331,] 53.20740 -1.0666164 7.799532
#> [332,] 53.27014 -1.0672716 7.800073
#> [333,] 53.33288 -1.0679865 7.800638
#> [334,] 53.39562 -1.0687591 7.801227
#> [335,] 53.45836 -1.0695876 7.801840
#> [336,] 53.52109 -1.0704700 7.802477
#> [337,] 53.58383 -1.0714045 7.803138
#> [338,] 53.64657 -1.0723892 7.803822
#> [339,] 53.70931 -1.0734220 7.804531
#> [340,] 53.77205 -1.0745012 7.805264
#> [341,] 53.83479 -1.0756247 7.806021
#> [342,] 53.89753 -1.0767907 7.806802
#> [343,] 53.96027 -1.0779972 7.807608
#> [344,] 54.02301 -1.0792422 7.808438
#> [345,] 54.08575 -1.0805238 7.809292
#> [346,] 54.14849 -1.0818400 7.810170
#> [347,] 54.21122 -1.0831889 7.811073
#> [348,] 54.27396 -1.0845684 7.812000
#> [349,] 54.33670 -1.0859767 7.812951
#> [350,] 54.39944 -1.0874116 7.813926
#> [351,] 54.46218 -1.0888712 7.814926
#> [352,] 54.52492 -1.0903536 7.815949
#> [353,] 54.58766 -1.0918566 7.816997
#> [354,] 54.65040 -1.0933782 7.818069
#> [355,] 54.71314 -1.0949165 7.819165
#> [356,] 54.77588 -1.0964694 7.820285
#> [357,] 54.83862 -1.0980349 7.821429
#> [358,] 54.90135 -1.0996108 7.822597
#> [359,] 54.96409 -1.1011952 7.823788
#> [360,] 55.02683 -1.1027859 7.825003
#> [361,] 55.08957 -1.1043810 7.826241
#> [362,] 55.15231 -1.1059783 7.827503
#> [363,] 55.21505 -1.1075757 7.828789
#> [364,] 55.27779 -1.1091712 7.830097
#> [365,] 55.34053 -1.1107626 7.831429
#> [366,] 55.40327 -1.1123479 7.832783
#> [367,] 55.46601 -1.1139249 7.834160
#> [368,] 55.52875 -1.1154915 7.835560
#> [369,] 55.59148 -1.1170456 7.836983
#> [370,] 55.65422 -1.1185850 7.838427
#> [371,] 55.71696 -1.1201077 7.839894
#> [372,] 55.77970 -1.1216114 7.841383
#> [373,] 55.84244 -1.1230940 7.842894
#> [374,] 55.90518 -1.1245534 7.844426
#> [375,] 55.96792 -1.1259874 7.845980
#> [376,] 56.03066 -1.1273939 7.847555
#> [377,] 56.09340 -1.1287706 7.849151
#> [378,] 56.15614 -1.1301154 7.850767
#> [379,] 56.21888 -1.1314260 7.852405
#> [380,] 56.28161 -1.1327004 7.854063
#> [381,] 56.34435 -1.1339364 7.855741
#> [382,] 56.40709 -1.1351316 7.857439
#> [383,] 56.46983 -1.1362840 7.859156
#> [384,] 56.53257 -1.1373913 7.860893
#> [385,] 56.59531 -1.1384513 7.862650
#> [386,] 56.65805 -1.1394619 7.864425
#> [387,] 56.72079 -1.1404207 7.866220
#> [388,] 56.78353 -1.1413256 7.868032
#> [389,] 56.84627 -1.1421744 7.869864
#> [390,] 56.90900 -1.1429657 7.871713
#> [391,] 56.97174 -1.1436995 7.873580
#> [392,] 57.03448 -1.1443761 7.875464
#> [393,] 57.09722 -1.1449957 7.877366
#> [394,] 57.15996 -1.1455584 7.879286
#> [395,] 57.22270 -1.1460646 7.881222
#> [396,] 57.28544 -1.1465145 7.883175
#> [397,] 57.34818 -1.1469082 7.885144
#> [398,] 57.41092 -1.1472461 7.887130
#> [399,] 57.47366 -1.1475283 7.889133
#> [400,] 57.53640 -1.1477552 7.891151
#> [401,] 57.59913 -1.1479269 7.893185
#> [402,] 57.66187 -1.1480437 7.895235
#> [403,] 57.72461 -1.1481059 7.897300
#> [404,] 57.78735 -1.1481137 7.899381
#> [405,] 57.85009 -1.1480674 7.901477
#> [406,] 57.91283 -1.1479672 7.903587
#> [407,] 57.97557 -1.1478135 7.905713
#> [408,] 58.03831 -1.1476064 7.907853
#> [409,] 58.10105 -1.1473464 7.910008
#> [410,] 58.16379 -1.1470335 7.912177
#> [411,] 58.22653 -1.1466683 7.914361
#> [412,] 58.28926 -1.1462508 7.916558
#> [413,] 58.35200 -1.1457814 7.918770
#> [414,] 58.41474 -1.1452604 7.920995
#> [415,] 58.47748 -1.1446881 7.923234
#> [416,] 58.54022 -1.1440648 7.925487
#> [417,] 58.60296 -1.1433907 7.927753
#> [418,] 58.66570 -1.1426663 7.930032
#> [419,] 58.72844 -1.1418917 7.932324
#> [420,] 58.79118 -1.1410673 7.934629
#> [421,] 58.85392 -1.1401934 7.936948
#> [422,] 58.91666 -1.1392703 7.939279
#> [423,] 58.97939 -1.1382983 7.941623
#> [424,] 59.04213 -1.1372778 7.943979
#> [425,] 59.10487 -1.1362090 7.946348
#> [426,] 59.16761 -1.1350923 7.948729
#> [427,] 59.23035 -1.1339280 7.951122
#> [428,] 59.29309 -1.1327165 7.953528
#> [429,] 59.35583 -1.1314579 7.955945
#> [430,] 59.41857 -1.1301528 7.958375
#> [431,] 59.48131 -1.1288014 7.960816
#> [432,] 59.54405 -1.1274040 7.963269
#> [433,] 59.60679 -1.1259610 7.965734
#> [434,] 59.66952 -1.1244727 7.968210
#> [435,] 59.73226 -1.1229395 7.970698
#> [436,] 59.79500 -1.1213617 7.973197
#> [437,] 59.85774 -1.1197396 7.975708
#> [438,] 59.92048 -1.1180736 7.978229
#> [439,] 59.98322 -1.1163641 7.980762
#> [440,] 60.04596 -1.1146113 7.983306
#> [441,] 60.10870 -1.1128156 7.985861
#> [442,] 60.17144 -1.1109774 7.988426
#> [443,] 60.23418 -1.1090971 7.991003
#> [444,] 60.29692 -1.1071749 7.993590
#> [445,] 60.35965 -1.1052112 7.996188
#> [446,] 60.42239 -1.1032065 7.998796
#> [447,] 60.48513 -1.1011610 8.001415
#> [448,] 60.54787 -1.0990751 8.004045
#> [449,] 60.61061 -1.0969491 8.006684
#> [450,] 60.67335 -1.0947835 8.009334
#> [451,] 60.73609 -1.0925786 8.011995
#> [452,] 60.79883 -1.0903348 8.014665
#> [453,] 60.86157 -1.0880523 8.017346
#> [454,] 60.92431 -1.0857317 8.020036
#> [455,] 60.98705 -1.0833732 8.022737
#> [456,] 61.04978 -1.0809772 8.025447
#> [457,] 61.11252 -1.0785441 8.028168
#> [458,] 61.17526 -1.0760743 8.030898
#> [459,] 61.23800 -1.0735681 8.033638
#> [460,] 61.30074 -1.0710259 8.036388
#> [461,] 61.36348 -1.0684480 8.039147
#> [462,] 61.42622 -1.0658349 8.041916
#> [463,] 61.48896 -1.0631869 8.044694
#> [464,] 61.55170 -1.0605044 8.047482
#> [465,] 61.61444 -1.0577878 8.050279
#> [466,] 61.67718 -1.0550374 8.053086
#> [467,] 61.73991 -1.0522537 8.055901
#> [468,] 61.80265 -1.0494369 8.058726
#> [469,] 61.86539 -1.0465875 8.061561
#> [470,] 61.92813 -1.0437058 8.064404
#> [471,] 61.99087 -1.0407923 8.067257
#> [472,] 62.05361 -1.0378473 8.070118
#> [473,] 62.11635 -1.0348711 8.072989
#> [474,] 62.17909 -1.0318643 8.075869
#> [475,] 62.24183 -1.0288270 8.078757
#> [476,] 62.30457 -1.0257598 8.081654
#> [477,] 62.36730 -1.0226630 8.084560
#> [478,] 62.43004 -1.0195370 8.087475
#> [479,] 62.49278 -1.0163822 8.090399
#> [480,] 62.55552 -1.0131988 8.093331
#> [481,] 62.61826 -1.0099875 8.096272
#> [482,] 62.68100 -1.0067484 8.099221
#> [483,] 62.74374 -1.0034820 8.102179
#> [484,] 62.80648 -1.0001887 8.105145
#> [485,] 62.86922 -0.9968689 8.108120
#> [486,] 62.93196 -0.9935229 8.111103
#> [487,] 62.99470 -0.9901511 8.114095
#> [488,] 63.05743 -0.9867539 8.117094
#> [489,] 63.12017 -0.9833317 8.120102
#> [490,] 63.18291 -0.9798849 8.123119
#> [491,] 63.24565 -0.9764138 8.126143
#> [492,] 63.30839 -0.9729188 8.129175
#> [493,] 63.37113 -0.9694004 8.132216
#> [494,] 63.43387 -0.9658588 8.135264
#> [495,] 63.49661 -0.9622945 8.138321
#> [496,] 63.55935 -0.9587079 8.141385
#> [497,] 63.62209 -0.9550993 8.144457
#> [498,] 63.68483 -0.9514691 8.147537
#> [499,] 63.74756 -0.9478177 8.150625
#> [500,] 63.81030 -0.9441455 8.153720
#> [501,] 63.87304 -0.9404528 8.156823
#> [502,] 63.93578 -0.9367401 8.159934
#> [503,] 63.99852 -0.9330077 8.163052
#> [504,] 64.06126 -0.9292560 8.166178
#> [505,] 64.12400 -0.9254853 8.169311
#> [506,] 64.18674 -0.9216961 8.172451
#> [507,] 64.24948 -0.9178887 8.175599
#> [508,] 64.31222 -0.9140635 8.178755
#> [509,] 64.37496 -0.9102209 8.181917
#> [510,] 64.43769 -0.9063613 8.185087
#> [511,] 64.50043 -0.9024850 8.188264
#> [512,] 64.56317 -0.8985924 8.191447
#> [513,] 64.62591 -0.8946838 8.194638
#> [514,] 64.68865 -0.8907598 8.197836
#> [515,] 64.75139 -0.8868205 8.201041
#> [516,] 64.81413 -0.8828664 8.204253
#> [517,] 64.87687 -0.8788980 8.207471
#> [518,] 64.93961 -0.8749154 8.210697
#> [519,] 65.00235 -0.8709192 8.213929
#> [520,] 65.06509 -0.8669096 8.217167
#> [521,] 65.12782 -0.8628871 8.220412
#> [522,] 65.19056 -0.8588521 8.223664
#> [523,] 65.25330 -0.8548048 8.226922
#> [524,] 65.31604 -0.8507456 8.230187
#> [525,] 65.37878 -0.8466750 8.233458
#> [526,] 65.44152 -0.8425933 8.236735
#> [527,] 65.50426 -0.8385008 8.240018
#> [528,] 65.56700 -0.8343979 8.243308
#> [529,] 65.62974 -0.8302851 8.246603
#> [530,] 65.69248 -0.8261625 8.249905
#> [531,] 65.75522 -0.8220307 8.253212
#> [532,] 65.81795 -0.8178899 8.256526
#> [533,] 65.88069 -0.8137405 8.259845
#> [534,] 65.94343 -0.8095830 8.263170
#> [535,] 66.00617 -0.8054175 8.266500
#> [536,] 66.06891 -0.8012446 8.269836
#> [537,] 66.13165 -0.7970645 8.273178
#> [538,] 66.19439 -0.7928776 8.276525
#> [539,] 66.25713 -0.7886843 8.279877
#> [540,] 66.31987 -0.7844849 8.283235
#> [541,] 66.38261 -0.7802798 8.286598
#> [542,] 66.44535 -0.7760692 8.289966
#> [543,] 66.50808 -0.7718537 8.293339
#> [544,] 66.57082 -0.7676335 8.296717
#> [545,] 66.63356 -0.7634089 8.300100
#> [546,] 66.69630 -0.7591804 8.303488
#> [547,] 66.75904 -0.7549482 8.306881
#> [548,] 66.82178 -0.7507127 8.310278
#> [549,] 66.88452 -0.7464743 8.313680
#> [550,] 66.94726 -0.7422332 8.317086
#> [551,] 67.01000 -0.7379899 8.320497
#> [552,] 67.07274 -0.7337447 8.323912
#> [553,] 67.13548 -0.7294979 8.327331
#> [554,] 67.19821 -0.7252499 8.330754
#> [555,] 67.26095 -0.7210010 8.334181
#> [556,] 67.32369 -0.7167515 8.337613
#> [557,] 67.38643 -0.7125017 8.341048
#> [558,] 67.44917 -0.7082521 8.344487
#> [559,] 67.51191 -0.7040029 8.347929
#> [560,] 67.57465 -0.6997545 8.351375
#> [561,] 67.63739 -0.6955071 8.354825
#> [562,] 67.70013 -0.6912612 8.358278
#> [563,] 67.76287 -0.6870171 8.361734
#> [564,] 67.82560 -0.6827751 8.365193
#> [565,] 67.88834 -0.6785354 8.368656
#> [566,] 67.95108 -0.6742986 8.372121
#> [567,] 68.01382 -0.6700646 8.375590
#> [568,] 68.07656 -0.6658335 8.379061
#> [569,] 68.13930 -0.6616054 8.382535
#> [570,] 68.20204 -0.6573801 8.386012
#> [571,] 68.26478 -0.6531578 8.389492
#> [572,] 68.32752 -0.6489384 8.392975
#> [573,] 68.39026 -0.6447219 8.396461
#> [574,] 68.45300 -0.6405084 8.399950
#> [575,] 68.51573 -0.6362977 8.403441
#> [576,] 68.57847 -0.6320900 8.406936
#> [577,] 68.64121 -0.6278852 8.410434
#> [578,] 68.70395 -0.6236833 8.413934
#> [579,] 68.76669 -0.6194843 8.417437
#> [580,] 68.82943 -0.6152883 8.420944
#> [581,] 68.89217 -0.6110952 8.424453
#> [582,] 68.95491 -0.6069050 8.427965
#> [583,] 69.01765 -0.6027177 8.431480
#> [584,] 69.08039 -0.5985333 8.434998
#> [585,] 69.14313 -0.5943519 8.438519
#> [586,] 69.20586 -0.5901734 8.442043
#> [587,] 69.26860 -0.5859979 8.445570
#> [588,] 69.33134 -0.5818252 8.449099
#> [589,] 69.39408 -0.5776555 8.452632
#> [590,] 69.45682 -0.5734887 8.456167
#> [591,] 69.51956 -0.5693249 8.459706
#> [592,] 69.58230 -0.5651639 8.463247
#> [593,] 69.64504 -0.5610059 8.466792
#> [594,] 69.70778 -0.5568509 8.470339
#> [595,] 69.77052 -0.5526987 8.473889
#> [596,] 69.83326 -0.5485495 8.477442
#> [597,] 69.89599 -0.5444033 8.480998
#> [598,] 69.95873 -0.5402599 8.484557
#> [599,] 70.02147 -0.5361195 8.488119
#> [600,] 70.08421 -0.5319821 8.491684
Session info ``` r devtools::session_info() #> Session info ------------------------------------------------------------- #> setting value #> version R version 3.4.2 (2017-09-28) #> system x86_64, mingw32 #> ui RTerm #> language (EN) #> collate English_United States.1252 #> tz Europe/Berlin #> date 2017-10-04 #> Packages ----------------------------------------------------------------- #> package * version date source #> acepack 1.4.1 2016-10-29 CRAN (R 3.4.1) #> backports 1.1.0 2017-05-22 CRAN (R 3.4.0) #> base * 3.4.2 2017-09-28 local #> base64enc 0.1-3 2015-07-28 CRAN (R 3.4.0) #> bitops 1.0-6 2013-08-17 CRAN (R 3.4.0) #> checkmate 1.8.3 2017-07-03 CRAN (R 3.4.1) #> cluster 2.0.6 2017-03-16 CRAN (R 3.4.1) #> colorspace 1.3-2 2016-12-14 CRAN (R 3.4.1) #> compiler 3.4.2 2017-09-28 local #> data.table 1.10.4 2017-02-01 CRAN (R 3.4.0) #> datasets * 3.4.2 2017-09-28 local #> devtools 1.13.3 2017-08-02 CRAN (R 3.4.1) #> digest 0.6.12 2017-01-27 CRAN (R 3.4.1) #> evaluate 0.10.1 2017-06-24 CRAN (R 3.4.1) #> foreign 0.8-69 2017-06-21 CRAN (R 3.4.0) #> Formula 1.2-2 2017-07-10 CRAN (R 3.4.1) #> ggplot2 2.2.1 2016-12-30 CRAN (R 3.4.1) #> graphics * 3.4.2 2017-09-28 local #> grDevices * 3.4.2 2017-09-28 local #> grid 3.4.2 2017-09-28 local #> gridExtra 2.3 2017-09-09 CRAN (R 3.4.1) #> gtable 0.2.0 2016-02-26 CRAN (R 3.4.1) #> Hmisc 4.0-3 2017-05-02 CRAN (R 3.4.1) #> htmlTable 1.9 2017-01-26 CRAN (R 3.4.1) #> htmltools 0.3.6 2017-04-28 CRAN (R 3.4.1) #> htmlwidgets 0.9 2017-07-10 CRAN (R 3.4.1) #> knitr 1.17 2017-08-10 CRAN (R 3.4.1) #> lattice 0.20-35 2017-03-25 CRAN (R 3.4.1) #> latticeExtra 0.6-28 2016-02-09 CRAN (R 3.4.1) #> lazyeval 0.2.0 2016-06-12 CRAN (R 3.4.1) #> magrittr 1.5 2014-11-22 CRAN (R 3.4.1) #> Matrix 1.2-11 2017-08-16 CRAN (R 3.4.1) #> memoise 1.1.0 2017-04-21 CRAN (R 3.4.1) #> methods * 3.4.2 2017-09-28 local #> munsell 0.4.3 2016-02-13 CRAN (R 3.4.1) #> nnet 7.3-12 2016-02-02 CRAN (R 3.4.1) #> plyr 1.8.4 2016-06-08 CRAN (R 3.4.1) #> RColorBrewer 1.1-2 2014-12-07 CRAN (R 3.4.0) #> Rcpp 0.12.12 2017-07-15 CRAN (R 3.4.1) #> RCurl 1.95-4.8 2016-03-01 CRAN (R 3.4.0) #> rlang 0.1.2 2017-08-09 CRAN (R 3.4.1) #> rmarkdown 1.6 2017-06-15 CRAN (R 3.4.1) #> rpart 4.1-11 2017-04-21 CRAN (R 3.4.1) #> rprojroot 1.2 2017-01-16 CRAN (R 3.4.1) #> scales 0.5.0 2017-08-24 CRAN (R 3.4.1) #> splines 3.4.2 2017-09-28 local #> stats * 3.4.2 2017-09-28 local #> stringi 1.1.5 2017-04-07 CRAN (R 3.4.0) #> stringr 1.2.0 2017-02-18 CRAN (R 3.4.1) #> survival 2.41-3 2017-04-04 CRAN (R 3.4.1) #> tibble 1.3.4 2017-08-22 CRAN (R 3.4.1) #> tools 3.4.2 2017-09-28 local #> utils * 3.4.2 2017-09-28 local #> withr 2.0.0 2017-07-28 CRAN (R 3.4.1) #> XML 3.98-1.9 2017-06-19 CRAN (R 3.4.0) #> yaml 2.1.14 2016-11-12 CRAN (R 3.4.1) ```
harrelfe commented 6 years ago

Output is too long and I don't understand what is the problem

CorradoLanera commented 6 years ago

I thought that the aim of that option was to avoid printing the output. Solved as suggested by @couthcommander in CorradoLanera/SuDACDa#2.

harrelfe commented 6 years ago

According to the help file it suppresses printing regression coefficients and standard errors. Note that this function is very limited in comparison to what the rms package and its Predict, plot, ggplot, and plotp functions can do.