I think we should leave in a very simple notebook that simulates the coalsescent model to generate synthetic data, then uses mushi to fit it. I guess you have an old version sitting around somewhere?
Running the "simulation" notebook, on the other hand, takes a while to generate the data since it uses the more complicated msprime model.
I think we should leave in a very simple notebook that simulates the coalsescent model to generate synthetic data, then uses mushi to fit it. I guess you have an old version sitting around somewhere?
Running the "simulation" notebook, on the other hand, takes a while to generate the data since it uses the more complicated msprime model.