Handle missing genotypes in input VCFs with hypergeometric projection for ksfs

harrispopgen / mutyper

Ancestral k-mer mutation types for SNP data

https://harrispopgen.github.io/mutyper/

MIT License

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Handle missing genotypes in input VCFs with hypergeometric projection for ksfs #12

Open wsdewitt opened 4 years ago

wsdewitt commented 4 years ago

Missing genotype calls raise an error in the mutyper ksfs command. We'd like to be able to handle this, since most data sets will not come with complete genotype imputation.