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harry-thorpe / piggy

Pipeline for analysing intergenic regions in bacteria
GNU General Public License v3.0
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parallel may breaks output #10

Closed EricDeveaud closed 5 years ago

EricDeveaud commented 7 years ago

Hello,

while running piggy with option -t > 1 we have the output clutered by parallel citation request message

this depends on the distro you use, some distro disable the notice some not.

it can be solved by using parallel --no-notice in the parallel calls see: http://lists.gnu.org/archive/html/parallel/2013-11/msg00006.html

attached patch fix it.

regards

Eric silent_parallel.patch.txt

harry-thorpe commented 7 years ago

Hi Eric,

Yes I'm aware of this issue, but in my version of parallel the --no-notice tag breaks it. I think the best solution is to follow the citation instructions to remove the message, but I will look into it further.

Thanks,

Harry