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harry-thorpe / piggy

Pipeline for analysing intergenic regions in bacteria
GNU General Public License v3.0
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Add Dockerfile #13

Open andrewjpage opened 7 years ago

andrewjpage commented 7 years ago

I've added a Dockerfile which allows for a container containing Piggy to be built (with all dependancies). If you sign up to https://hub.docker.com/ and create an automated build pointing at your github repo, it will create a new container each time you make a change.

To install it (assuming you signed up as harrythorpe to hub.docker.com):

docker pull harrythorpe/piggy

To use it you would use a command such as this (substituting in your directories), where your GFF files are assumed to be stored in /home/ubuntu/data:

docker run --rm -it -v /home/ubuntu/data:/data harrythorpe/piggy piggy -r roary_dir *.gff
harry-thorpe commented 7 years ago

Hi Andrew,

Thanks for this. I'll get to it as soon as I can, but I am on holiday at the moment.

Thanks,

Harry

tseemann commented 4 years ago

I hoped you enjoyed your 2 year holiday Harry :-P