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hart-lab / bagel

BAGEL software
MIT License
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Syntax error #25

Closed ADvorkinGheva closed 3 years ago

ADvorkinGheva commented 3 years ago

Greetings,

I've installed Bagel and tried to run the example; however, I have received the following error message:

python run_bagel_crisprcleanr.py -i HAP1-TKOv3-EXAMPLE.txt -s HAP1-TKOv3-EXAMPLE-SCREENINFO.txt -o HAP1-TKOv3-bagel
  File "run_bagel_crisprcleanr.py", line 218
    print(f"\n{filenames_rep.loc[rep,'ccr_fc']} doesn't exist. Skipped!\n")
                                                                         ^
SyntaxError: invalid syntax

I have checked and the Python I am running is 2.7, so this case does not seem to be the same as the Issue #1 .

Thank you!

Regards, ANna

rooeikim commented 3 years ago

Hi Anna,

BAGEL2 was tested in python 3 and the syntax is not supported in python 2. Since the python 2 version has been depreciated in 2019, so we decided to not support the legacy version. We apologize for it.

Best, Eiru Kim.

ADvorkinGheva commented 3 years ago

Hi Eiru,

Thank you! I have switched to Python 3 and now everything seems to be running without any error messages.

Regards, Anna