Cleaner installation on linux systems

[sanyalab]

Hello,

I was wondering if the Entap installation code can be tweaked for a cleaner installation. I have the following configuration

OS: Fedora 8.7 (Ootpa) GCC: gcc (GCC) 8.5.0 20210514 (Red Hat 8.5.0-16) python: 2.7.18 cmake: 3.28.1

No issues for cmake CMakeLists.txt; cmake CMakeLists.txt -DCMAKE_INSTALL_PREFIX=/destination/dir from the EnTap top dir.

Lots of warnings on doing make install after this. Some examples below

[ 5%] Building CXX object CMakeFiles/EnTAP.dir/src/ExceptionHandler.cpp.o [ 8%] Building CXX object CMakeFiles/EnTAP.dir/src/EntapGlobals.cpp.o [ 10%] Building CXX object CMakeFiles/EnTAP.dir/src/EntapConfig.cpp.o [ 13%] Building CXX object CMakeFiles/EnTAP.dir/src/EntapExecute.cpp.o In file included from /home/sanyalab/SOFTWARE/EnTAP-1.0.1/src/expression/ModRSEM.h:34, from /home/sanyalab/SOFTWARE/EnTAP-1.0.1/src/ExpressionAnalysis.h:38, from /home/sanyalab/SOFTWARE/EnTAP-1.0.1/src/EntapExecute.h:36, from /home/sanyalab/SOFTWARE/EnTAP-1.0.1/src/EntapExecute.cpp:30: /home/sanyalab/SOFTWARE/EnTAP-1.0.1/libs/fast-cpp-csv-parser/csv.h:1096:22: warning: unnecessary parentheses in declaration of ‘row’ [-Wparentheses] char*(row[column_count]); ^

AND

In file included from /home/sanyalab/SOFTWARE/EnTAP-1.0.1/src/expression/ModRSEM.h:34, from /home/sanyalab/SOFTWARE/EnTAP-1.0.1/src/expression/ModRSEM.cpp:30: /home/sanyalab/SOFTWARE/EnTAP-1.0.1/libs/fast-cpp-csv-parser/csv.h: In member function ‘virtual void io::error::can_not_open_file::format_error_message() const’: /home/sanyalab/SOFTWARE/EnTAP-1.0.1/libs/fast-cpp-csv-parser/csv.h:119:49: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=] "Can not open file \"%s\"." ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/sanyalab/SOFTWARE/EnTAP-1.0.1/libs/fast-cpp-csv-parser/csv.h:118:54: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 256 std::snprintf(error_message_buffer, sizeof(error_message_buffer), ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "Can not open file \"%s\"." ~~~~~~~~~~~~~~~~~~~~~~~~~~~ , file_name); ~~~~~~~~~~~~ /home/sanyalab/SOFTWARE/EnTAP-1.0.1/libs/fast-cpp-csv-parser/csv.h:115:49: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=] "Can not open file \"%s\" because \"%s\"." ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/sanyalab/SOFTWARE/EnTAP-1.0.1/libs/fast-cpp-csv-parser/csv.h:114:54: note: ‘snprintf’ output 33 or more bytes (assuming 288) into a destination of size 256 std::snprintf(error_message_buffer, sizeof(error_message_buffer), ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "Can not open file \"%s\" because \"%s\"." ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ , file_name, std::strerror(errno_value)); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/sanyalab/SOFTWARE/EnTAP-1.0.1/libs/fast-cpp-csv-parser/csv.h: In member function ‘virtual void io::error::line_length_limit_exceeded::format_error_message() const’:

Can anything be done for a cleaner installation?

Thanks Abhijit

[harta55]

These are warning messages from a library used by EnTAP (will not affect the compilation) and will be resolved in the next version

[harta55]

Changes made to latest version of EnTAP, 1.1.0