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harta55 / EnTAP

Eukaryotic Non-Model Transcriptome Annotation Pipeline - Latest Release v1.4.0 - Revamped final graphics coming soon!
https://entap.readthedocs.io/en/latest/
GNU General Public License v3.0
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Only entap_results.tsv has the results #75

Closed sanyalab closed 6 months ago

sanyalab commented 8 months ago

Hello,

The test data fan successfully via Entap, as mentioned by the tool. However, On closer examination, I find that the annotations are only present in file entap_results.tsv. Files annotated.faa and annotated.fnn have no annotations. They are unannotated, but fasta formatted. Same this is seen for annotated_without_contam.faa and annotated_without_contam.fnn. Is this a bug?

Abhijit

harta55 commented 8 months ago

Hello Abhijit, That is normal! the fnn/faa files contain the fasta formatted (for nucleotide/protein) versions of the sequences that were annotated through either similarity search or the ontology phase. Your entap_results.tsv file will have all of this information and more as tab-delim.