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harta55 / EnTAP

Eukaryotic Non-Model Transcriptome Annotation Pipeline - Latest Release v1.4.0 - Revamped final graphics coming soon!
https://entap.readthedocs.io/en/latest/
GNU General Public License v3.0
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New release: Error in ini file #83

Closed AlexGaithuma closed 3 months ago

AlexGaithuma commented 4 months ago

I get the following error when configuring

command: EnTAP --config --run-ini entap_config.ini --entap-ini entap_run.params

Error code: 12
Incorrect format in config file at line: data-generate=false
harta55 commented 4 months ago

Hey! It looks like you just need to swap the files. run-ini should correspond to the entap_run.params file

AlexGaithuma commented 4 months ago

@harta55 thanks! Ps: The command was copied from entap.readthedocs.io

juliayork commented 3 months ago

Hey, I ran into the same problem. I switched the files and got the same error again. I ran: ~/bin/EnTAP/EnTAP --config --run-ini ~/bin/EnTAP/entap_run.params --entap-ini ~/bin/EnTAP/entap_config.ini

it gives: Parsing ini file at: /home/jmy/bin/EnTAP/entap_run.params Parsing ini file at: /home/jmy/bin/EnTAP/entap_config.ini Error code: 10

Invalid INI file format at line: data-generate=false

help please!!

harta55 commented 3 months ago

Hey! Have not seen this. There aren't any weird formatting issues in the entap_config.ini around there? Including any trailing spaces or tabs, etc?

juliayork commented 3 months ago

No weird spaces but I entered the full paths for everything (just took out some ~) and that fixed it. Sorry about that. It now ran successfully. Thanks!!

harta55 commented 3 months ago

Docs updated to correct the config/ini file commands in the example with latest v1.2.0