Open AlexGaithuma opened 1 month ago
fixed issue by installing python 2.7 in my conda environment which had python 3.7 already installed
conda env update -n my_env --file python27.yml
my .yml file contains
name: python27
dependencies:
- python=2.7
- virtualenv
- ipython
- numpy
- scipy
Hey! Did you modify the config file interproscan-db
or protein
(if using older version) commands in between runs? By default, there aren't databases listed for those commands which would give you an error.
Hi! I already use EnTap Version1.2.1 in docker, and I guess the problem is at the database flag "morbidblite" in the file "entap_run.params". When I put all database: interproscan-db=tigrfam interproscan-db=sfld interproscan-db=prodom interproscan-db=hamap interproscan-db=pfam interproscan-db=smart interproscan-db=cdd interproscan-db=prositeprofiles interproscan-db=prositepatterns interproscan-db=superfamily interproscan-db=prints interproscan-db=panther interproscan-db=gene3d interproscan-db=pirsf interproscan-db=coils interproscan-db=morbidblite in "entap_run.params", the error message "Error code: 10 InterProScan selected, but invalid databases input!" was shown. However, when I removed the final one "interproscan-db=morbidblite", the EnTap worked.
But another problem happens that the output file "interpro_results.gff3" only shows the result of "Coils" database when I used all interproscan database.
I cant ran Interproscan on Entap. my debug file is as below: