the lack of a file - Githubissues

hartleys / QoRTs

Quality of RNA-Seq Toolset

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the lack of a file #51

Open chyr03 opened 6 years ago

chyr03 commented 6 years ago

Hi, The count data of my bam files was produced by QoRT , but the "QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz" file can not be founded in the outputdata directory. How does it come about? thanks for an answer.

hartleys commented 6 years ago

See the JunctionSeq manual, section 4.4.

In order to add the novel splice junctions, you need to run an additional QoRTs utility, "mergeNovelSplices".