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hartleys / QoRTs

Quality of RNA-Seq Toolset
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Does QoRTs can take more than one fastq files ? #70

Open paulinefx opened 6 years ago

paulinefx commented 6 years ago

Hello,

I want to run QoRTs for my samples. I have several fastq files for each sample, as the sequencing as been run on several lines. Do I have to merge the files or QoRTs accepts several files ? If it does accept several files, is there a specific command line to use ?

Thanks, Kind regards,

Pauline

hartleys commented 5 years ago

There are a number of options here. The easiest is to simply concatenate the files using the cat command:

<( cat file1.fa file2.fa ... )

Use the above instead of a file name. Bash will automatically hand qorts a "file" with the fastas concatenated.