This is rather a feature request than an issue. Like DEXSeq has this functionality to disable the aggregate gene mode (removing the exons that are shared between two or more genes), can we have this feature in Qorts too. Such exons are often problematic with a high number of reads, creating false results of differential exon usage and cause a lot of Binning (eg: 70 bins for TERF2 in humans), or does JunctionSeq package has a way to handle such exons?
Hi Sir
This is rather a feature request than an issue. Like DEXSeq has this functionality to disable the aggregate gene mode (removing the exons that are shared between two or more genes), can we have this feature in Qorts too. Such exons are often problematic with a high number of reads, creating false results of differential exon usage and cause a lot of Binning (eg: 70 bins for TERF2 in humans), or does JunctionSeq package has a way to handle such exons?