There is no header in the cytoBands.38.tsv file embedded in the linx_v1.23.1.jar refgenome/ directory, so when linx visualizer runs chromosomeRangePlot.R, it crashes (no chrom object to be found by dplyr mutate, since there was no header).
Also, it may not create a problem, but the cytoBands.37.tsv header is delimited with spaces, while the the rest of the file is tab delimited.
There is no header in the cytoBands.38.tsv file embedded in the linx_v1.23.1.jar refgenome/ directory, so when linx visualizer runs chromosomeRangePlot.R, it crashes (no chrom object to be found by dplyr mutate, since there was no header).
Also, it may not create a problem, but the cytoBands.37.tsv header is delimited with spaces, while the the rest of the file is tab delimited.