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hartwigmedical / hmftools

Various algorithms for analysing genomics data
GNU General Public License v3.0
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Cannot find SageGermlinePon.98x.38.vcf.gz #368

Closed FedericaBrando closed 1 year ago

FedericaBrando commented 1 year ago

Hi, Unfortunately I cannot find the Hartwig panel of normals for somatic SNV/INDEL variant calling anymore: SageGermlinePon.98x.38.vcf.gz.

I used to download it from https://nextcloud.hartwigmedicalfoundation.nl/s/LTiKTd8XxBqwaiC/download?path=%2FHMFTools-Resources%2FSage%2F38&files=SageGermlinePon.98x.38.vcf.gz, but the link is not working anymore.

Where could I find it? I onlt found the tsv one [SageGermlinePon.98x.38.tsv.gz] , not the vcf.

Thanks in advance, Federica

charlesshale commented 1 year ago

We not longer support the PON in this format. Pave uses the same contents but in a condensed TSV format.

Our public resource files are now stored in GCP: https://console.cloud.google.com/storage/browser/hmf-public/HMFtools-Resources/dna_pipeline/