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hartwigmedical / hmftools

Various algorithms for analysing genomics data
GNU General Public License v3.0
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circos issue #371

Closed felixbeaudry closed 1 year ago

felixbeaudry commented 1 year ago

Hi there,

Really enjoy purple and the whole hartwig suite, thank you!

I'm getting an error with purple-v3.8.1: [ERROR] charting error: java.nio.file.NoSuchFileException: purple_output/circos/OCT_011408_Co_P_OCT_011408-TS.circos.conf I don't have circos enabled (and I don't have circos installed). The PURPLE documentation suggests issues with circos would only arise when the circos flag is used. The issue does not appear if I add the -no_charts flag. I can use the no-charts flag, but would prefer to have the R charts run .

Thank you! Felix

charlesshale commented 1 year ago

Hi Felix,

From the next release of Purple (v3.8.)2 it will generate the R plots but skip the Circos plots if the path to the circos binary is not provided in config.