Hello all, I'm having issues with Linx visualiser in Oncoanalyser and after some discussion with Stephen over Slack, it seems that it could be a bug in Linx.
I downloaded circos binaries and tried running Linx visualiser locally outside of the pipeline, but it is still unsuccessful in generating .png's (error log attached: linx_standalone.txt). Then I tried to -resume a recent Oncoanalyser run that passed through until Linx visualiser locally instead to see if maybe it could be a HPC-issue, but the error persists (attached, all other log files). Could you maybe help me with this?
Hello all, I'm having issues with Linx visualiser in Oncoanalyser and after some discussion with Stephen over Slack, it seems that it could be a bug in Linx.
I downloaded circos binaries and tried running Linx visualiser locally outside of the pipeline, but it is still unsuccessful in generating .png's (error log attached: linx_standalone.txt). Then I tried to
-resumea recent Oncoanalyser run that passed through until Linx visualiser locally instead to see if maybe it could be a HPC-issue, but the error persists (attached, all other log files). Could you maybe help me with this?linx_standalone.txt command.txt command_err.txt command_log.txt command_run.txt nextflowlog.txt command_out.txt
thanks a lot for your help!
best,