issues
search
hartwigmedical
/
hmftools
Various algorithms for analysing genomics data
GNU General Public License v3.0
193
stars
59
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
How can we identify LOH on some HLA allele in Lilac's output?
#327
Biojenifer
closed
2 years ago
1
DEV-2848 Add sampleIdMapping
#326
stefvanlieshout
closed
1 year ago
0
pave pon Artefact file for 37
#325
DavyCats
closed
2 years ago
2
GRIPSS on GRIDSS svtypes
#324
stsergbg
closed
2 years ago
3
GRIPSS 2.2 RepeatMasker parsing error
#323
scwatts
closed
2 years ago
4
Data Access Issue
#322
felixbeaudry
closed
2 years ago
2
Documentation question: purple segment tsv column name meanings
#321
jamesdalg
closed
2 years ago
1
HMF demo pipeline Sage error
#320
gbnci
closed
2 years ago
6
java error on local system - sage_v3.0_rc3
#319
MjelleLab
closed
2 years ago
1
Lilac gene copy number
#318
jaesvi
closed
2 years ago
1
germline vs somatic LiLac HLAtyping
#317
Biojenifer
closed
2 years ago
1
LiLaC error: Unrecognized option: -gene_copy_number_file
#316
Biojenifer
closed
2 years ago
1
Error with specific regions plotting in LINX visualization
#315
jamesdalg
closed
2 years ago
2
Cannot find somatic SNV/INDEL PON
#314
DarraghNimmo1
closed
2 years ago
1
Purple not generating some files
#313
Biojenifer
closed
2 years ago
2
File format TUMOR.purple.cnv.somatic.tsv
#312
hylkedonker
closed
2 years ago
1
Question about mappability bed and downstream filtering
#311
toddajohnson
closed
1 year ago
1
Bump numpy from 1.19.5 to 1.22.0 in /cuppa/src/main/resources/cuppa-chart
#310
dependabot[bot]
closed
10 months ago
1
PAVE and mappability_bed argument
#309
toddajohnson
closed
2 years ago
1
Bump mysql-connector-java from 8.0.16 to 8.0.28
#308
dependabot[bot]
closed
10 months ago
1
patient-db duplicate entry error
#307
jamesdalg
closed
1 year ago
5
Problem loading class GenerateEnselmbDataCache while running gene-utils
#306
FrancescaMiccolis
closed
2 years ago
4
PURPLE and germline only mode
#305
toddajohnson
closed
2 years ago
5
hotspot fusions not annotated
#304
abelhj
closed
2 years ago
7
hotspot fusions being filtered by 'dedup'
#303
abelhj
closed
5 months ago
9
Total number of mutations per sample
#302
MjelleLab
closed
2 years ago
1
GRIPSS - ref_genome_version HG38
#301
stsergbg
closed
2 years ago
8
SAGE_3.0_rc2 throws java.lang.NullPointerException
#300
toddajohnson
closed
2 years ago
1
GRIPSS changing variant coordinates
#299
stsergbg
closed
2 years ago
1
Bump retrofit from 2.4.0 to 2.5.0
#298
dependabot[bot]
closed
1 year ago
1
Dev 2739
#297
DFKoetsier
closed
2 years ago
1
Does variant calling using SAGE 3.0 necessitate creating new PONs?
#296
toddajohnson
closed
2 years ago
1
PURPLE - Empty gene copy number file
#295
yaplab-dev
closed
2 years ago
4
Release, git tag, and assets for compar v1.0
#294
scwatts
closed
2 years ago
2
simple question: LINX and descriptive names
#293
jamesdalg
closed
2 years ago
2
Isofox 1.5 crash
#292
toddajohnson
closed
2 years ago
2
PURPLE germline-only run
#291
TuanTrain
closed
2 years ago
8
teal: read groups could not be completed
#290
YingYa
closed
2 years ago
7
lilac: java.lang.StringIndexOutOfBoundsException: String index out of range
#289
YingYa
closed
2 years ago
6
Unable to parse flagstat file correctly
#288
YingYa
closed
2 years ago
1
Teal: java.lang.NumberFormatException: For input string
#287
YingYa
closed
2 years ago
1
How to pull out all the option for GRIPSS?
#286
zhujack
closed
2 years ago
1
GRIPSS truncated file causing error in GRIPSS. Exception in thread "main" htsjdk.tribble.TribbleException$MalformedFeatureFile: Unable to parse header with error: Premature end of file:
#285
jamesdalg
closed
2 years ago
3
Error: Could not find or load main class com.hartwig.hmftools.sage.SageApplication
#284
jamesdalg
closed
2 years ago
2
Some updated tools without complied jar files in the releases page
#283
YingYa
closed
2 years ago
2
DEV-2712 Port later cuppa-chart to 1.6
#282
nedleitch
closed
2 years ago
0
Conda versions are not up to date
#281
Kdreval
closed
2 years ago
7
Where the compar.jar could be downloaded?
#280
YingYa
closed
2 years ago
1
Clinvar 38 missing chr
#279
jaesvi
closed
2 years ago
2
Question about GRIPSS filtered VCF
#278
toddajohnson
closed
2 years ago
1
Previous
Next