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hartwigmedical
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platinum
Run multiple Pipeline5 instances at once
GNU General Public License v3.0
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Fix jar path of docker build
#66
stefvanlieshout
closed
6 months ago
0
Support for starting from Aligned BAM files
#65
p-smirnov
opened
6 months ago
3
INFRA-429 Update fabric8 dependency
#64
stefvanlieshout
closed
6 months ago
0
DEV-3776 Fix JAR name in platinum script
#63
DFKoetsier
closed
7 months ago
0
INFRA-344 Remedy eventual token expiry errors
#62
nedleitch
closed
6 months ago
0
INFRA-322 add git tag release automation to platinum
#61
KasperWolsink99
closed
8 months ago
0
INFRA-320 Use new hmf-api client with added datatypes
#60
stefvanlieshout
closed
8 months ago
0
Support alpha and beta version in pipeline5 tag
#59
stefvanlieshout
closed
9 months ago
0
DEV-3724 Update hmfapi java client
#58
stefvanlieshout
closed
10 months ago
0
DEV-3692 Update PDL with turquoise subject to support pipeline 5.33.8
#57
stefvanlieshout
closed
11 months ago
0
DEV-3670 Sundry improvements to Platinum
#56
nedleitch
closed
1 year ago
0
DEV-3575 Fix reference-only mode
#55
nedleitch
closed
1 year ago
0
DEV-3550 Refactor to use Workload Identity (WIP)
#54
nedleitch
closed
1 year ago
0
DEV-3552 Improvements to Platinum flow
#53
nedleitch
closed
1 year ago
0
DEV-3487 Improve batch defaults and messaging
#52
nedleitch
closed
1 year ago
0
DEV-3465 Correct job submission logic
#51
nedleitch
closed
1 year ago
0
DEV-3396 Fix logic inversion
#50
nedleitch
closed
1 year ago
0
DEV-3378 Fix handling of existing jobs
#49
nedleitch
closed
1 year ago
0
Unable to build platinum-local-SNAPSHOT.jar
#48
Jasper51297
opened
1 year ago
0
DEV-3337 Fix auth loop
#47
nedleitch
closed
1 year ago
0
DEV-3323 Using a supplier instead.
#46
pauldwolfe
closed
1 year ago
0
DEV-3323 Populate PDL asynchronously
#45
nedleitch
closed
1 year ago
0
DEV-3326 Update Fabric8 dependency
#44
nedleitch
closed
1 year ago
0
Bump kubernetes-client from 5.3.0 to 5.3.2
#43
dependabot[bot]
closed
1 year ago
1
DEV-3324 Add client proxy to allow reconnects
#42
nedleitch
closed
1 year ago
0
DEV-3284 Add memory limits for non-rerun jobs
#41
nedleitch
closed
1 year ago
0
DEV-3254 Use setId and context but ignore dbStatus for run selection
#40
stefvanlieshout
closed
1 year ago
0
DEV-3229 Add a ConfigMap per pipeline job
#39
nedleitch
closed
1 year ago
0
DEV-3228 Improve handling of multi-set samples
#38
nedleitch
closed
1 year ago
0
DEV-3172 Fix problems found during run attempt
#37
mvanniekerkHartwig
closed
1 year ago
0
DEV-3172 reformat and cleanup
#36
mvanniekerkHartwig
closed
1 year ago
0
DEV-3172 Refactor the conversion of platinum config to per-pipeline config
#35
pauldwolfe
closed
1 year ago
0
DEV-3118 Constant job count scheduler
#34
nedleitch
closed
1 year ago
0
DEV-2987 Halt when node pool cannot be created
#33
nedleitch
closed
1 year ago
0
DEV-2956 Make new runs with is_hidden set
#32
nedleitch
closed
2 years ago
0
DEV-2715 Add Platinum JAR to Maven
#31
nedleitch
closed
2 years ago
0
DEV-2618 Add support for tumor only
#30
pauldwolfe
closed
2 years ago
0
DEV-2564 Platinum Docker container
#29
nedleitch
closed
2 years ago
0
DEV-2618 Add job TTL argument to GCP config
#28
pauldwolfe
closed
2 years ago
0
DEV-2569 Configure fastq input based on bucket structure
#27
pauldwolfe
closed
2 years ago
0
DEV-2484 Add ability to specify creation of a node pool
#26
pauldwolfe
closed
2 years ago
0
Analyses does not complete on example data
#25
DominikGlodzik
closed
2 years ago
3
Refresh credentials on K8 exception
#24
pauldwolfe
closed
3 years ago
0
DEV-1862 Bunch of improvements stemming for the initial ticket
#23
pauldwolfe
closed
3 years ago
0
DEV-1864 Overhaul of platinum configuration
#22
pauldwolfe
closed
3 years ago
0
DEV-1754 Set network tag config on the node pool
#21
pauldwolfe
closed
3 years ago
0
DEV-1754 Add cluster auto-scaling
#20
pauldwolfe
closed
3 years ago
0
DEV-1680 Upgrade Platinum JUnit
#19
nedleitch
closed
3 years ago
0
DEV-1669 Instructions for HG38
#18
nedleitch
closed
3 years ago
0
DEV-1655 Adjust job name to prevent duplicates instead of namespace
#17
pauldwolfe
closed
3 years ago
0
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