Update path, enable conda

harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

MIT License

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Closed aewebb80 closed 10 months ago

aewebb80 commented 10 months ago

Was unable to test the environment using the example in the docs.

Was able to resolve the error by:

Updating path from ./test/ecoli to .test/ecoli [./.test/ecoli would also work].
Including --use-conda in the command, otherwise it was unable to build the environments

cademirch commented 10 months ago

Thanks for catching this Andrew. The docs are mostly done for now but obviously are still in need of some work.

Let me know if you find any sections confusing or unclear!