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harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
63 stars 30 forks source link

Update setup.md #155

Closed cademirch closed 4 months ago

cademirch commented 4 months ago

Pin snakemake==7.32.4 and python==3.11.4 due to issues support snakemake>7 and issues with fstrings in python>3.11

tsackton commented 4 months ago

Can you check that pyd4 can be installed with python 3.11, and update the cov_filter yaml to match what we pin in setup.md? I think that this will solve some of the issues that people have with pyd4, as I suspect that you can't change the python version in a rule.

If we can pin python 3.11 everywhere that would be great.