This is a small patch to make the admixture call in QC a bit more stable. I'm not sure why, but sometimes admixture errors with "contig names must be integers" even when they are all integers. Issue #122 may be an example of this. Now this just updates the bim file so that the names are 1:n, where n is the number of scaffolds.
This is a small patch to make the admixture call in QC a bit more stable. I'm not sure why, but sometimes admixture errors with "contig names must be integers" even when they are all integers. Issue #122 may be an example of this. Now this just updates the bim file so that the names are 1:n, where n is the number of scaffolds.