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harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
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slurm command not appearing on docs page #176

Closed jasonwjohns closed 2 months ago

jasonwjohns commented 2 months ago

Hi guys,

I'm looking to start a run with the new slurm configurations, and looking at the docs page, it shows the below:

Screenshot 2024-04-13 at 8 21 45 AM

It looks like the command is missing. If so, would you mind sending it to me and/or updating the docs page. Thanks so much!

Jason

cademirch commented 2 months ago

Hi Jason, Thanks for catching that. I’ll update it now.

On Sat, Apr 13, 2024 at 08:23 jasonwjohns @.***> wrote:

Hi guys,

I'm looking to start a run with the new slurm configurations, and looking at the docs page, it shows the below: Screenshot.2024-04-13.at.8.21.45.AM.png (view on web) https://github.com/harvardinformatics/snpArcher/assets/36780700/a598e490-6724-403a-b224-0be2a75d1e81

It looks like the command is missing. If so, would you mind sending it to me and/or updating the docs page. Thanks so much!

Jason

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cademirch commented 2 months ago

@jasonwjohns can see here https://snparcher.readthedocs.io/en/docs-staging/executing.html

need to wait for review before merging #177

jasonwjohns commented 2 months ago

Thank you Cade!

On Sat, Apr 13, 2024 at 9:31 AM Cade Mirchandani @.***> wrote:

Closed #176 https://github.com/harvardinformatics/snpArcher/issues/176 as completed.

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