KeyError while setting up dry run

harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

MIT License

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KeyError while setting up dry run #180

Closed spilornis-ng closed 2 months ago

spilornis-ng commented 2 months ago

Hi! While setting up a dry run to check if everything looks fine, I get the following error.

KeyError in file /mnt/hdd/Naman/Naman_wgs_trial/snparcher_trial/snpArcher/workflow/rules/common.smk, line 25: 'resource_config' File "/mnt/hdd/Naman/Naman_wgs_trial/snparcher_trial/snpArcher/workflow/rules/common.smk", line 25, in

I was wondering if there is something wrong in the way I have setup my config.yaml and sample sheet.

cademirch commented 2 months ago

Hi @spilornis-ng, this will be fixed shortly.

Edit: In the meantime you can delete line 25 in common.smk.