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harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
63 stars 30 forks source link

use json summary from fastp to make sure all stdout/stderr goes to log #184

Closed cademirch closed 2 months ago

cademirch commented 2 months ago

Should help with #183. I suspect whatever error occured in fastp in that issue was written to the summary.out, which then got deleted by snakemake