harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
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Ref unzip fix #211

Closed erikenbody closed 5 days ago

erikenbody commented 1 week ago

It seems that the conda distribution for 7z is quite outdated (v16.02). I'm having issues unzipping large reference genomes (>4gb compressed) that looks like this old 7z issue. There doesn't seem to be any other 7z on conda we can draw from, so instead I revert to unzip if 7z fails. Check this for sanity, not sure if its a bad idea in some cases I can't imagine.