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harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
63 stars 30 forks source link

Dev - run script fix #24

Closed sjswuitchik closed 2 years ago

sjswuitchik commented 2 years ago

Created a new run script to call Snakefile, removed old Snakfile_* and associated run scripts, removed run_script dir and put new run script (run_pipeline.sh) into the main dir.

tsackton commented 2 years ago

In the config/config.yml you changed the tmp dir from something generic like 'tmp/' to /scratch/....', can you change back for portability?

sjswuitchik commented 2 years ago

Yes, didn't realize that went over, sorry! Fixed, now is tmp/