At some point, would like this pipeline to be useable as part of Workflowhub, to allow easy extension with other tools that work from VCFs, for example. Need to add additional files requested by WorkflowHub for this to be possible:
Code of Conduct
Contribution instructions
Workflow rule graph
Workflow documentation
Config documentation in the form of a config.md. This should include guidance for the low coverage parameters and the interval creation parameters.
Add a YAML file .snakemake-workflow-catalog.yml in the root directory which displays usage instructions. See description here.
Also need to ensure directory structure is organized properly.
At some point, would like this pipeline to be useable as part of Workflowhub, to allow easy extension with other tools that work from VCFs, for example. Need to add additional files requested by WorkflowHub for this to be possible:
Also need to ensure directory structure is organized properly.