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harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
63 stars 30 forks source link

Sambamba #44

Closed cademirch closed 2 years ago

cademirch commented 2 years ago

This update adds Sambamba markdup for marking duplicates. Also reworked how bam summary stats are created.