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harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
63 stars 30 forks source link

Add bedgraph computation #47

Closed tsackton closed 2 years ago

tsackton commented 2 years ago

This pull request adds rules to compute a bedgraph of per-base coverage for each bam file, and then merge these into a single bedgraph with coverage per BioSample.