added a 'genome' name variable to fix output file name consistency with intervals workflow (could also not have this as variable in the config but rather change the naming convention in the intervals workflow, I'd be fine with doing either)
removed commented out code from prior testing
removed fastqDir parameter
added resource request for merge_bams rule
We can probably wait to merge this PR until after our meeting tomorrow when we discuss the directory structure of the workflows (i.e., keeping genome-specific lists in the intervals workflow or not).
We can probably wait to merge this PR until after our meeting tomorrow when we discuss the directory structure of the workflows (i.e., keeping genome-specific lists in the intervals workflow or not).