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harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
63 stars 30 forks source link

update sequence download code #65

Closed tsackton closed 1 year ago

tsackton commented 1 year ago

Uses ffq to get urls to download accessions that fail to be fetched with SRA tools. Closes #62 and #64