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harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
63 stars 30 forks source link

Fix duplicate sample issues #71

Closed tsackton closed 1 year ago

tsackton commented 1 year ago

Some functions in common.smk did not properly handle situations with duplicate BioSamples (e.g., because of multiple runs associated with a single BioSample). This should fix those problems.