address fasterq-dump error code 3.

harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

MIT License

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address fasterq-dump error code 3. #80

Closed cademirch closed 1 year ago

cademirch commented 1 year ago

default to fastq-dump if this occurs.

see #79

tsackton commented 1 year ago

Per comment on issue, I think that we should not implement this change for the reasons you cite, as it is probably going to just generate unusable files. So closing this for now. But reopen if discussion is warranted.