harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
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Qc map fix #86

Closed erikenbody closed 1 year ago

erikenbody commented 1 year ago

the QC module originally only had north America for plotting. I set up some logical defaults to plot anything in the world and tweaked the settings around the scope of the map. I also reduced the number of PCs shown in figure 2, as it was quite crowded. Also, now the maps are produced even if there is no google API key provided.