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harvardinformatics / snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
MIT License
63 stars 30 forks source link

Merge mk into main #93

Closed tsackton closed 1 year ago

tsackton commented 1 year ago

This pull request adds MK and postprocess modules to the workflow.

Both modules are only run if there is a "SampleType" column in the sample sheet. Postprocess is run as long as the column exists; MK is only run if there are samples with the ingroup and outgroup labels.