petsc4py fails

[certik]

Another notorious player:

[petsc4py] running ['bash', '../bash_script']
[petsc4py] cwd: /panfs/scratch3/vol18/certik/python-hpcmp2/bld/petsc4py-n-5w3f/src
[petsc4py] environment:
[petsc4py]   {'ARTIFACT': '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc4py/5w3f',
[petsc4py]    'BUILD': '/panfs/scratch3/vol18/certik/python-hpcmp2/bld/petsc4py-n-5w3f',
[petsc4py]    'HDIST_CFLAGS': '-I/panfs/scratch3/vol18/certik/python-hpcmp2/opt/python/axfn/include -I/panfs/scratch3/vol18/certik/python-hpcmp2/opt/zlib/usvu/include -I/panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc/u33p/include -I/panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt/include',
[petsc4py]    'HDIST_CONFIG': '{"builder/build-temp":"/panfs/scratch3/vol18/certik/python-hpcmp2/bld","sourcecache/sources":"/panfs/scratch3/vol18/certik/python-hpcmp2/src","builder/artifacts":"/panfs/scratch3/vol18/certik/python-hpcmp2/opt","global/cache":"/panfs/scratch3/vol18/certik/python-hpcmp2/cache","builder/artifact-dir-pattern":"{name}/{shorthash}","global/db":"/panfs/scratch3/vol18/certik/python-hpcmp2/db"}',
[petsc4py]    'HDIST_IMPORT': 'numpy/klpmo32vajxkcj5wr75erjpa2bzzdldn launcher/gbaghc5quzejtuyrpawwepqn3tgaawmu python/axfnkccyue6dy4l2ilac54oukz3juvcb zlib/usvubstjijmjryrbgyp47wek77or2o7g petsc/u33pkemvetmfmdit4g7vwihwmjshemef mpich/mhdtlra3c3q3rh43tpy653hukhs66itw',
[petsc4py]    'HDIST_IMPORT_PATHS': '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/numpy/klpm /panfs/scratch3/vol18/certik/python-hpcmp2/opt/launcher/gbag /panfs/scratch3/vol18/certik/python-hpcmp2/opt/python/axfn /panfs/scratch3/vol18/certik/python-hpcmp2/opt/zlib/usvu /panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc/u33p /panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt',
[petsc4py]    'HDIST_LDFLAGS': '-L/panfs/scratch3/vol18/certik/python-hpcmp2/opt/numpy/klpm/lib -Wl,-R,/panfs/scratch3/vol18/certik/python-hpcmp2/opt/numpy/klpm/lib -L/panfs/scratch3/vol18/certik/python-hpcmp2/opt/python/axfn/lib -Wl,-R,/panfs/scratch3/vol18/certik/python-hpcmp2/opt/python/axfn/lib -L/panfs/scratch3/vol18/certik/python-hpcmp2/opt/zlib/usvu/lib -Wl,-R,/panfs/scratch3/vol18/certik/python-hpcmp2/opt/zlib/usvu/lib -L/panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc/u33p/lib -Wl,-R,/panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc/u33p/lib -L/panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt/lib -Wl,-R,/panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt/lib',
[petsc4py]    'HDIST_VIRTUALS': '',
[petsc4py]    'LAUNCHER': '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/launcher/gbag',
[petsc4py]    'LAUNCHER_ID': 'launcher/gbaghc5quzejtuyrpawwepqn3tgaawmu',
[petsc4py]    'MPICH': '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt',
[petsc4py]    'MPICH_ID': 'mpich/mhdtlra3c3q3rh43tpy653hukhs66itw',
[petsc4py]    'NUMPY': '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/numpy/klpm',
[petsc4py]    'NUMPY_ID': 'numpy/klpmo32vajxkcj5wr75erjpa2bzzdldn',
[petsc4py]    'PATH': '/usr/bin:/bin',
[petsc4py]    'PETSC': '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc/u33p',
[petsc4py]    'PETSC_ID': 'petsc/u33pkemvetmfmdit4g7vwihwmjshemef',
[petsc4py]    'PYTHON': '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/python/axfn',
[petsc4py]    'PYTHONHPC_PREFIX': '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc4py/5w3f',
[petsc4py]    'PYTHON_ID': 'python/axfnkccyue6dy4l2ilac54oukz3juvcb',
[petsc4py]    'ZLIB': '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/zlib/usvu',
[petsc4py]    'ZLIB_ID': 'zlib/usvubstjijmjryrbgyp47wek77or2o7g'}
[petsc4py] Constructed the following PYTHONPATH:
[petsc4py] /panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc4py/5w3f/lib/python2.4/site-packages:/panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt/lib/python2.4/site-packages:/panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc/u33p/lib/python2.4/site-packages:/panfs/scratch3/vol18/certik/python-hpcmp2/opt/zlib/usvu/lib/python2.4/site-packages:/panfs/scratch3/vol18/certik/python-hpcmp2/opt/python/axfn/lib/python2.4/site-packages:/panfs/scratch3/vol18/certik/python-hpcmp2/opt/launcher/gbag/lib/python2.4/site-packages:/panfs/scratch3/vol18/certik/python-hpcmp2/opt/numpy/klpm/lib/python2.4/site-packages
[petsc4py] 
[petsc4py] running build
[petsc4py] running build_src
[petsc4py] running build_py
[petsc4py] creating build
[petsc4py] creating build/lib.linux-x86_64-2.7
[petsc4py] creating build/lib.linux-x86_64-2.7/petsc4py
[petsc4py] copying src/__main__.py -> build/lib.linux-x86_64-2.7/petsc4py
[petsc4py] copying src/__init__.py -> build/lib.linux-x86_64-2.7/petsc4py
[petsc4py] copying src/help.py -> build/lib.linux-x86_64-2.7/petsc4py
[petsc4py] copying src/PETSc.py -> build/lib.linux-x86_64-2.7/petsc4py
[petsc4py] creating build/lib.linux-x86_64-2.7/petsc4py/lib
[petsc4py] copying src/lib/__init__.py -> build/lib.linux-x86_64-2.7/petsc4py/lib
[petsc4py] creating build/lib.linux-x86_64-2.7/petsc4py/include
[petsc4py] creating build/lib.linux-x86_64-2.7/petsc4py/include/petsc4py
[petsc4py] copying src/include/petsc4py/numpy.h -> build/lib.linux-x86_64-2.7/petsc4py/include/petsc4py
[petsc4py] copying src/include/petsc4py/petsc4py.PETSc_api.h -> build/lib.linux-x86_64-2.7/petsc4py/include/petsc4py
[petsc4py] copying src/include/petsc4py/petsc4py.PETSc.h -> build/lib.linux-x86_64-2.7/petsc4py/include/petsc4py
[petsc4py] copying src/include/petsc4py/petsc4py.h -> build/lib.linux-x86_64-2.7/petsc4py/include/petsc4py
[petsc4py] copying src/include/petsc4py/petsc4py.i -> build/lib.linux-x86_64-2.7/petsc4py/include/petsc4py
[petsc4py] copying src/include/petsc4py/PETSc.pxd -> build/lib.linux-x86_64-2.7/petsc4py/include/petsc4py
[petsc4py] copying src/include/petsc4py/__init__.pxd -> build/lib.linux-x86_64-2.7/petsc4py/include/petsc4py
[petsc4py] copying src/include/petsc4py/__init__.pyx -> build/lib.linux-x86_64-2.7/petsc4py/include/petsc4py
[petsc4py] copying src/lib/petsc.cfg -> build/lib.linux-x86_64-2.7/petsc4py/lib
[petsc4py] running build_ext
[petsc4py] PETSC_DIR:   /panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc/u33p
[petsc4py] PETSC_ARCH:  
[petsc4py] scalar-type: real
[petsc4py] precision:   double
[petsc4py] language:    CONLY
[petsc4py] compiler:    /panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt/bin/mpicc
[petsc4py] linker:      /panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt/bin/mpicc
[petsc4py] building 'PETSc' extension
[petsc4py] creating build/temp.linux-x86_64-2.7
[petsc4py] creating build/temp.linux-x86_64-2.7/src
[petsc4py] /panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt/bin/mpicc -pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -fPIC -fno-strict-aliasing -I/usr/include/ -DNDEBUG -g -fwrapv -O3 -Wall -DPETSC_DIR=/panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc/u33p -D__INSDIR__=petsc4py-3.3.1/ -I/panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt/include -I/panfs/scratch3/vol18/certik/python-hpcmp2/opt/petsc/u33p/include -Isrc/include -I/panfs/scratch3/vol18/certik/python-hpcmp2/opt/python/axfn/include/python2.7 -c src/PETSc.c -o build/temp.linux-x86_64-2.7/src/PETSc.o
[petsc4py] In file included from src/petsc4py.PETSc.c:258,
[petsc4py]                  from src/PETSc.c:3:
[petsc4py] src/include/petsc4py/numpy.h:7:31: error: numpy/arrayobject.h: No such file or directory
[petsc4py] In file included from src/PETSc.c:3:
[petsc4py] src/petsc4py.PETSc.c:670: error: expected specifier-qualifier-list before 'PyArrayObject'
[petsc4py] In file included from src/PETSc.c:3:
[petsc4py] src/petsc4py.PETSc.c:1782: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1783: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1784: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1785: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1786: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1787: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1788: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1789: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1790: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1791: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1792: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1793: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1794: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1795: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1796: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1797: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1798: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:1799: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:5968: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6011: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6073: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6126: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6179: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6232: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6285: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6373: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6461: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6549: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6641: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6725: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6809: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6893: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:6985: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:7069: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:7153: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:7237: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:7321: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c:7405: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_10_IS_buffer_19__array_interface_____get__':
[petsc4py] src/petsc4py.PETSc.c:13387: error: 'PyArray_Descr' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:13387: error: (Each undeclared identifier is reported only once
[petsc4py] src/petsc4py.PETSc.c:13387: error: for each function it appears in.)
[petsc4py] src/petsc4py.PETSc.c:13387: error: '__pyx_v_descr' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:13442: warning: implicit declaration of function 'PyArray_DescrFromType'
[petsc4py] src/petsc4py.PETSc.c:13442: error: 'NPY_INT' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:13442: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:13444: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_vecsetvalues':
[petsc4py] src/petsc4py.PETSc.c:15071: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_iarray_i'
[petsc4py] src/petsc4py.PETSc.c:15071: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:15083: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_iarray_s'
[petsc4py] src/petsc4py.PETSc.c:15083: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_vecgetvalues':
[petsc4py] src/petsc4py.PETSc.c:15309: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:15331: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_empty_s'
[petsc4py] src/petsc4py.PETSc.c:15331: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:15359: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_oarray_s'
[petsc4py] src/petsc4py.PETSc.c:15359: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_vec_getarray':
[petsc4py] src/petsc4py.PETSc.c:15474: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_asarray'
[petsc4py] src/petsc4py.PETSc.c:15474: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_vec_setarray':
[petsc4py] src/petsc4py.PETSc.c:15506: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:15506: error: '__pyx_v_ary' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:15550: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:15552: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c:15573: warning: implicit declaration of function 'PyArray_NDIM'
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_vec_getitem':
[petsc4py] src/petsc4py.PETSc.c:15805: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:15925: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_arange'
[petsc4py] src/petsc4py.PETSc.c:15925: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_vec_setitem':
[petsc4py] src/petsc4py.PETSc.c:16141: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_11_Vec_buffer_enter':
[petsc4py] src/petsc4py.PETSc.c:16810: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_11_Vec_buffer_19__array_interface_____get__':
[petsc4py] src/petsc4py.PETSc.c:17330: error: 'PyArray_Descr' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:17330: error: '__pyx_v_descr' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:17385: error: 'NPY_DOUBLE' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:17385: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:17387: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_Mat_AllocAIJ_NNZ':
[petsc4py] src/petsc4py.PETSc.c:20599: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:20670: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_Mat_AllocAIJ_CSR':
[petsc4py] src/petsc4py.PETSc.c:21164: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:21177: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:21218: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_Mat_AllocDense_ARRAY':
[petsc4py] src/petsc4py.PETSc.c:21616: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_ofarray_s'
[petsc4py] src/petsc4py.PETSc.c:21616: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_matsetvalues':
[petsc4py] src/petsc4py.PETSc.c:21926: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:21938: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:21950: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_matsetvalues_rcv':
[petsc4py] src/petsc4py.PETSc.c:22078: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:22078: error: '__pyx_v_ai' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:22079: error: '__pyx_v_aj' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:22080: error: '__pyx_v_av' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:22187: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:22189: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c:22199: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:22201: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c:22211: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:22213: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c:22259: warning: implicit declaration of function 'PyArray_ISCONTIGUOUS'
[petsc4py] src/petsc4py.PETSc.c:22385: warning: implicit declaration of function 'PyArray_DIM'
[petsc4py] src/petsc4py.PETSc.c:22412: warning: implicit declaration of function 'PyArray_SIZE'
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_matsetvalues_ijv':
[petsc4py] src/petsc4py.PETSc.c:22707: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:22719: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:22731: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:22783: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_matgetvalues':
[petsc4py] src/petsc4py.PETSc.c:23262: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:23262: error: '__pyx_v_rows' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:23263: error: '__pyx_v_cols' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:23315: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:23317: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c:23327: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:23329: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c:23349: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:23383: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_mat_getitem':
[petsc4py] src/petsc4py.PETSc.c:24420: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:24543: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_mat_setitem':
[petsc4py] src/petsc4py.PETSc.c:24800: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:24923: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_matsetvaluestencil':
[petsc4py] src/petsc4py.PETSc.c:25374: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_13_DA_Vec_array_acquire':
[petsc4py] src/petsc4py.PETSc.c:31774: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31786: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:31791: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31791: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31791: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31792: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31792: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:31792: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c:31804: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31816: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_f_8petsc4py_5PETSc_13_DA_Vec_array_release':
[petsc4py] src/petsc4py.PETSc.c:31880: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31880: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31880: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31881: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:31881: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:31881: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_13_DA_Vec_array_2__getitem__':
[petsc4py] src/petsc4py.PETSc.c:31967: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_13_DA_Vec_array_4__setitem__':
[petsc4py] src/petsc4py.PETSc.c:32050: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_13_DA_Vec_array_5array___get__':
[petsc4py] src/petsc4py.PETSc.c:32343: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:32344: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2IS_16createGeneral':
[petsc4py] src/petsc4py.PETSc.c:57000: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2IS_18createBlock':
[petsc4py] src/petsc4py.PETSc.c:57201: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2IS_64setIndices':
[petsc4py] src/petsc4py.PETSc.c:59632: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2IS_66getIndices':
[petsc4py] src/petsc4py.PETSc.c:59758: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_array_i'
[petsc4py] src/petsc4py.PETSc.c:59758: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2IS_68setBlockIndices':
[petsc4py] src/petsc4py.PETSc.c:59950: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2IS_70getBlockIndices':
[petsc4py] src/petsc4py.PETSc.c:60087: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2IS_5array___get__':
[petsc4py] src/petsc4py.PETSc.c:61017: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_5LGMap_8create':
[petsc4py] src/petsc4py.PETSc.c:61636: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_5LGMap_16getIndices':
[petsc4py] src/petsc4py.PETSc.c:62123: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_5LGMap_18getInfo':
[petsc4py] src/petsc4py.PETSc.c:62314: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_5LGMap_20apply':
[petsc4py] src/petsc4py.PETSc.c:62556: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:62571: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_empty_i'
[petsc4py] src/petsc4py.PETSc.c:62571: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:62587: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_oarray_i'
[petsc4py] src/petsc4py.PETSc.c:62587: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_5LGMap_22applyInverse':
[petsc4py] src/petsc4py.PETSc.c:62720: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:62720: error: '__pyx_v_result' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:62775: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:62820: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:62822: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:62825: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Vec_54createWithArray':
[petsc4py] src/petsc4py.PETSc.c:65539: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Vec_56createGhost':
[petsc4py] src/petsc4py.PETSc.c:65905: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Vec_58createGhostWithArray':
[petsc4py] src/petsc4py.PETSc.c:66180: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:66211: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Vec_86getOwnershipRanges':
[petsc4py] src/petsc4py.PETSc.c:67755: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Vec_92placeArray':
[petsc4py] src/petsc4py.PETSc.c:68032: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Vec_176maxpy':
[petsc4py] src/petsc4py.PETSc.c:72637: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:72649: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_empty_p'
[petsc4py] src/petsc4py.PETSc.c:72649: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:72651: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_oarray_p'
[petsc4py] src/petsc4py.PETSc.c:72651: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Vec_238setMPIGhost':
[petsc4py] src/petsc4py.PETSc.c:76160: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Vec_5array___get__':
[petsc4py] src/petsc4py.PETSc.c:76641: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_96getOwnershipRanges':
[petsc4py] src/petsc4py.PETSc.c:83879: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_100getOwnershipRangesColumn':
[petsc4py] src/petsc4py.PETSc.c:84089: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_140getValuesCSR':
[petsc4py] src/petsc4py.PETSc.c:86697: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:86697: error: '__pyx_v_ai' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:86701: error: '__pyx_v_aj' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:86703: error: '__pyx_v_av' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:86762: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:86764: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:86767: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c:86843: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:86845: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:86848: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c:86867: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:86869: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:86872: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_142getRow':
[petsc4py] src/petsc4py.PETSc.c:87105: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:87117: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_array_s'
[petsc4py] src/petsc4py.PETSc.c:87117: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_144getRowIJ':
[petsc4py] src/petsc4py.PETSc.c:87336: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:87354: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_146getColumnIJ':
[petsc4py] src/petsc4py.PETSc.c:87569: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:87587: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_194zeroRows':
[petsc4py] src/petsc4py.PETSc.c:90762: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_196zeroRowsLocal':
[petsc4py] src/petsc4py.PETSc.c:90994: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_198zeroRowsColumns':
[petsc4py] src/petsc4py.PETSc.c:91226: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3Mat_226invertBlockDiagonal':
[petsc4py] src/petsc4py.PETSc.c:92882: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:92882: error: '__pyx_v_ibdiag' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:92948: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:92950: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_9NullSpace_8create':
[petsc4py] src/petsc4py.PETSc.c:99318: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:99320: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2PC_76setFieldSplitFields':
[petsc4py] src/petsc4py.PETSc.c:104243: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3KSP_50setConvergenceHistory':
[petsc4py] src/petsc4py.PETSc.c:107424: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_empty_r'
[petsc4py] src/petsc4py.PETSc.c:107424: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:107426: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_oarray_r'
[petsc4py] src/petsc4py.PETSc.c:107426: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_3KSP_52getConvergenceHistory':
[petsc4py] src/petsc4py.PETSc.c:107536: warning: implicit declaration of function '__pyx_f_8petsc4py_5PETSc_array_r'
[petsc4py] src/petsc4py.PETSc.c:107536: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_4SNES_56setConvergenceHistory':
[petsc4py] src/petsc4py.PETSc.c:117266: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:117268: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:117281: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:117283: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_4SNES_58getConvergenceHistory':
[petsc4py] src/petsc4py.PETSc.c:117414: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:117426: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2AO_6createBasic':
[petsc4py] src/petsc4py.PETSc.c:135132: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:135155: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2AO_8createMemoryScalable':
[petsc4py] src/petsc4py.PETSc.c:135438: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:135461: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2AO_10createMapping':
[petsc4py] src/petsc4py.PETSc.c:135744: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:135767: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2AO_14app2petsc':
[petsc4py] src/petsc4py.PETSc.c:136045: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2AO_16petsc2app':
[petsc4py] src/petsc4py.PETSc.c:136217: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2DM_50refineHierarchy':
[petsc4py] src/petsc4py.PETSc.c:138968: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:138970: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2DM_52coarsenHierarchy':
[petsc4py] src/petsc4py.PETSc.c:139182: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c:139184: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_pf_8petsc4py_5PETSc_2DA_84getElements':
[petsc4py] src/petsc4py.PETSc.c:145339: warning: cast to pointer from integer of different size
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_tp_new_8petsc4py_5PETSc__DA_Vec_array':
[petsc4py] src/petsc4py.PETSc.c:156199: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:156199: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:156199: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_tp_dealloc_8petsc4py_5PETSc__DA_Vec_array':
[petsc4py] src/petsc4py.PETSc.c:156214: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:156214: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:156214: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_tp_traverse_8petsc4py_5PETSc__DA_Vec_array':
[petsc4py] src/petsc4py.PETSc.c:156237: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:156238: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c: In function '__pyx_tp_clear_8petsc4py_5PETSc__DA_Vec_array':
[petsc4py] src/petsc4py.PETSc.c:156261: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:156262: error: 'struct __pyx_obj_8petsc4py_5PETSc__DA_Vec_array' has no member named 'array'
[petsc4py] src/petsc4py.PETSc.c:156262: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:156262: error: expected expression before ')' token
[petsc4py] src/petsc4py.PETSc.c: In function 'initPETSc':
[petsc4py] src/petsc4py.PETSc.c:159641: error: 'PyArray_Descr' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:159642: error: 'PyArrayObject' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:159721: warning: implicit declaration of function '_import_array'
[petsc4py] src/petsc4py.PETSc.c:159730: warning: implicit declaration of function 'PyArray_TypeObjectFromType'
[petsc4py] src/petsc4py.PETSc.c:159730: error: 'NPY_INT' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:159730: warning: assignment makes pointer from integer without a cast
[petsc4py] src/petsc4py.PETSc.c:159742: error: 'NPY_DOUBLE' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:159742: warning: assignment makes pointer from integer without a cast
[petsc4py] src/petsc4py.PETSc.c:159754: warning: assignment makes pointer from integer without a cast
[petsc4py] src/petsc4py.PETSc.c:159766: error: 'NPY_CDOUBLE' undeclared (first use in this function)
[petsc4py] src/petsc4py.PETSc.c:159766: warning: assignment makes pointer from integer without a cast
[petsc4py] error: command '/panfs/scratch3/vol18/certik/python-hpcmp2/opt/mpich/mhdt/bin/mpicc' failed with exit status 1
[petsc4py ERROR] Command '['bash', '../bash_script']' returned non-zero exit status 1
[petsc4py ERROR] command failed (code=1); raising

[certik]

Here is a fix:

diff --git a/petsc4pyConfig/bash_script.linux b/petsc4pyConfig/bash_script.linux
index 3b139f4..8a4724b 100644
--- a/petsc4pyConfig/bash_script.linux
+++ b/petsc4pyConfig/bash_script.linux
@@ -2,7 +2,7 @@

 set -e

-cat << EOF | python
+cat << EOF | $PYTHON/bin/python
 import sys
 import os
 from os.path import join as pjoin, pathsep

In short: the wrong Python was picked up.

[certik]

Also make the same fix in pytables.