hasindu2008 / squigulator

a tool for simulating nanopore raw signal data
https://hasindu2008.github.io/squigulator
MIT License
58 stars 3 forks source link

Alternative version #9

Open HLHsieh opened 5 months ago

HLHsieh commented 5 months ago

Hello,

Thank you for providing this remarkable tool. I'd like to inquire if an alternative version of the tool is available that doesn't necessitate compilation. I'm currently working within the supercomputer infrastructure at my university, and unfortunately, I lack the necessary permissions to execute sudo commands. Having a version that doesn't require compilation would greatly facilitate my research.

Thank you for your assistance.

Best regards, Hsin

hasindu2008 commented 5 months ago

Hello, Can you try the pre-compiled binaries as explained at the beginning of the section https://github.com/hasindu2008/squigulator?tab=readme-ov-file#installation?

HLHsieh commented 5 months ago

Thanks for your prompt response. I successfully downloaded the file using the following commands:

VERSION=0.2.2
wget https://github.com/hasindu2008/squigulator/releases/download/v${VERSION}/squigulator-v${VERSION}-x86_64-linux-binaries.tar.gz
tar xf squigulator-v${VERSION}-x86_64-linux-binaries.tar.gz  && cd squigulator-v${VERSION}
./squigulator --help

Unfortunately, I cannot execute the following command since I lack the necessary permissions to run sudo commands:

sudo apt-get install zlib1g-dev

Is there any workaround?

Best, Hsin

hasindu2008 commented 5 months ago

What I meant was the first listed method of downloading and extracting the binaries.

VERSION=0.2.2
wget https://github.com/hasindu2008/squigulator/releases/download/v${VERSION}/squigulator-v${VERSION}-x86_64-linux-binaries.tar.gz
tar xf squigulator-v${VERSION}-x86_64-linux-binaries.tar.gz  && cd squigulator-v${VERSION}
./squigulator --help