Performing SACRA separately for each step

hattori-lab / SACRA

SACRA (Split Amplified Chimeric Read Algorithm) is the algorithm for correcting chimeric long-reads generated by MDA.

MIT License

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Performing SACRA separately for each step #3

Closed YuyaKiguchi closed 4 years ago

YuyaKiguchi commented 5 years ago

@metanav

SACRA perform four steps to split chimera, please read the README. And maybe the options to run SACRA each step independently is useful for users, so please add the options to SACRA.sh.

Thanks, Yuya

metanav commented 4 years ago

Which script we need to make parallel?

YuyaKiguchi commented 4 years ago

SACRA_PCratio.pl and samtools faidx processes are need to parallel. But I already made the parallel computing process, please check the code of SACRA.sh. STEP 3 and 4 were paralleled.