Closed Vikash84 closed 2 years ago
Sorry I didn't see this issue before. There is no profile named singularity in the current version of the pipeline. You can choose "local" if you are running the pipeline locally, or create your own if you're running on a hpc or a cloud computing service.
nextflow run Pipeline-16S -profile singularity --reads "data/*_R{1,2}_001.fastq.gz" --referenceAln databases/silva/v138/silva.nr_v138.align --referenceTax databases/silva/v138/silva.nr_v138.tax
N E X T F L O W ~ version 20.04.1 Launching
Pipeline-16S/main.nf
[determined_ekeblad] - revision: d665331f9a Unknown configuration profile: 'singularity'