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hbc / bcbioRNASeq

R package for bcbio RNA-seq analysis.
https://bioinformatics.sph.harvard.edu/bcbioRNASeq
GNU Affero General Public License v3.0
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could not locate "res.rda" file of "DESeqResults" type #119

Closed maximillo closed 5 years ago

maximillo commented 5 years ago

Dear developer,

Thanks for developing this nice package! I'm trying to get the functional annotation notebook to work with my own project. The DESeqResults is required. By running the differential expression notebook, there are three objects generated (res_list_unshrunken, res_list_shrunken, res_tbl_list). All of these are large list object instead of DESeqResult. Maybe I missed it in the notebook but I could not figure out in which step the DESeqResults was generated. Can you please advise? Thanks a lot!

Max

maximillo commented 5 years ago

Found the answer in a closed ticket. I'm closing this.