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hbc / bcbioRNASeq

R package for bcbio RNA-seq analysis.
https://bioinformatics.sph.harvard.edu/bcbioRNASeq
GNU Affero General Public License v3.0
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error loading DESeqAnalysis #149

Closed sjmonkley closed 4 years ago

sjmonkley commented 4 years ago

Running v 0.3.31 with latest Markdown template but get an error loading package DESeqAnalysis. Not sure if I should have reported the issue there but as I have a history here I thought I would continue. Looks like its looking to acidplots for upset rather than UpsetR?

library(DESeqAnalysis)
Error: package or namespace load failed for 'DESeqAnalysis':
 object 'upset' is not exported by 'namespace:acidplots'
mjsteinbaugh commented 4 years ago

What's this look like?

packageVersion("basejump")
packageVersion("acidplots")
packageVersion("DESeqAnalysis")
sjmonkley commented 4 years ago

sorry for the delay. DESeqAnalysis had not updated due to issues with required packages not installing. I fixed it by loading them manually so now they are all up to date its working. Thanks

mjsteinbaugh commented 4 years ago

Perfect, good to hear!