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hbctraining / Accessing_public_genomic_data

Tutorials on accessing public reference and genomic data
https://hbctraining.github.io/Accessing_public_genomic_data
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update the module #4

Open mistrm82 opened 1 year ago

mistrm82 commented 1 year ago

the downloading_from_SRA.md lesson needs to be updated. The code as is doesn't work.

One issue was resolved using current module module load sratoolkit/3.0.2

hwick commented 6 months ago

As of 3.5.24, code still doesn't work, even with updated sratoolkit.

One possible useful addition to this lesson could be to use curl after looking up the individual SRAs https://sra-explorer.info/#training-admin