hbctraining Intro-to-rnaseq-hpc-salmon-flipped issues

hbctraining / Intro-to-rnaseq-hpc-salmon-flipped

Introduction to bulk RNA-seq

https://hbctraining.github.io/Intro-to-rnaseq-hpc-salmon-flipped/

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salmon transcript-level to gene-level quantification

#30 Mitmischer closed 2 weeks ago
1
too much copy and paste in automation lesson

#29 eberdan opened 7 months ago
0
automation lesson slurm array link

#28 eberdan opened 7 months ago
0
automating rnaseq workflow

#27 eberdan opened 7 months ago
0
Missing link

#26 hwick opened 1 year ago
0
add arrays instead of for loop for parallelizing?

#25 mistrm82 closed 1 year ago
1
note for when to use ${var}

#24 mistrm82 closed 1 year ago
0
O2 login GIF

#23 Gammerdinger closed 1 year ago
0
Data to follow along

#22 Chrisdoan9 opened 2 years ago
1
data link for self-learners broken

#21 mistrm82 closed 2 years ago
1
add an example paired-end script for automation

#20 mistrm82 opened 2 years ago
0
missing bias value for Mov10_oe_3

#19 mistrm82 opened 2 years ago
0
HPC lesson updates and clarifications from Kathleen

#18 rkhetani opened 3 years ago
1
Initial commit for Sequence Alignment Theory page

#17 Gammerdinger opened 3 years ago
0
Added note about 2F-authentication

#16 Gammerdinger closed 3 years ago
0
FileZilla with 2F-authentication

#15 Gammerdinger closed 3 years ago
1
Added the README.txt to final code block

#14 Gammerdinger closed 3 years ago
0
Add note about knockout genes continuing to be expressed

#13 rkhetani opened 3 years ago
0
Experimental design considerations reminder

#12 marypiper opened 3 years ago
0
Reducing alignment slide deck

#11 marypiper opened 3 years ago
0
Add GC bias information

#10 marypiper opened 3 years ago
0
Ratio calculator for 5’-3’ bias: how do we calculate in bcbio?

#9 marypiper opened 3 years ago
0
Add positional bias information (discuss that it’s experimental, and that the 5’-3’ bias can be deduced using Qualimap (referencing Salmon)

#8 marypiper opened 3 years ago
0
Add answer key of Day 3

#7 marypiper closed 2 years ago
1
zoom poll questions?

#6 mistrm82 opened 3 years ago
2
redundancy with qualimap+multiQC and troubleshooting

#5 mistrm82 opened 3 years ago
1
Update and rename QC_Qualimap.md to 10_QC_Qualimap.md

#4 rkhetani closed 3 years ago
0
move details on data lifecycle to self-learning

#3 mistrm82 closed 3 years ago
0
Update reservation

#2 jihe-liu closed 2 years ago
1
update the shell review answer key

#1 mistrm82 closed 3 years ago
0