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hbctraining / scRNA-seq_online

https://hbctraining.github.io/scRNA-seq_online/.
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cell cycle phase in seurat_integrated isn't kept? #108

Closed hwick closed 10 months ago

hwick commented 10 months ago

Going through the materials, I successfully added cell cycle phase to seurat_norm However, SCT transform does not seem to keep phase in seurat_integrated

mistrm82 commented 10 months ago

Double checked seurat_phase, individual components of seurat_split (after SCT) and seurat_integrated - all have phase information. Maybe we can check your dataset together @hwick

closing issue since it does not affect class materials