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hbctraining
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scRNA-seq_online
https://hbctraining.github.io/scRNA-seq_online/.
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updating the lesson goals, challenges, recommendations
#71
mistrm82
opened
2 years ago
0
shuffling order of QC metrics
#70
mistrm82
closed
2 years ago
1
simplifying SCTransform explanation
#69
mistrm82
closed
1 year ago
1
Reference for pseudobulk approach for DE analysis
#68
marypiper
closed
1 year ago
2
Difference between normalizeData() and SCTransform()
#67
rkhetani
closed
1 year ago
1
Remove SingleCellExperiment package
#66
jihe-liu
closed
1 year ago
0
adding Day 2 dropdowns
#65
mistrm82
closed
2 years ago
0
adding dropdown previews Day1
#64
mistrm82
closed
2 years ago
0
adding snRNA-seq blurb to pre-reading
#63
mistrm82
closed
2 years ago
0
next dataset for revamping workshop
#62
marypiper
opened
2 years ago
0
update images for pseudobulk
#61
marypiper
closed
1 year ago
0
How to split Seurat objec according to sample or condition
#60
marypiper
closed
2 years ago
0
Add answer key
#59
jihe-liu
closed
2 years ago
1
DefaultAssay for marker indentification
#58
kpatel427
closed
2 years ago
1
add homework question to explore the Seurat object
#57
mistrm82
closed
1 month ago
1
update the workflow image
#56
mistrm82
closed
2 years ago
3
update R skeleton scripts for homework
#55
mistrm82
closed
3 years ago
1
Simpler way to go from seurat object to DESeq2 analysis?
#54
learning-MD
closed
2 years ago
1
Reference for the concept of complexity when processing scRNA-seq
#53
mlin11
closed
3 years ago
0
Add note about using raw data
#52
jihe-liu
closed
3 years ago
0
Suggestion for variable.features.n argument in SCTransform()
#51
msadman-sakib
closed
3 years ago
0
add resources
#50
marypiper
closed
1 year ago
6
suggested homework question for SCT lesson
#49
mistrm82
closed
3 years ago
1
suggested QC homework questions
#48
mistrm82
closed
2 years ago
4
Extend question for clustering lesson
#47
jihe-liu
closed
3 years ago
2
error when running FindConservedMarkers
#46
mistrm82
closed
3 years ago
1
update any use of write_rds
#45
mistrm82
closed
3 years ago
1
update project download zip
#44
mistrm82
closed
3 years ago
2
QC set-up lesson note
#43
marypiper
closed
3 years ago
1
added setup instructions
#42
mistrm82
closed
3 years ago
1
Update day1_polls.md
#41
mistrm82
closed
3 years ago
1
Wrong formula or description when calculating log10GenesPerUMI
#40
michael-kotliar
closed
3 years ago
1
Getting DE lesson back on schedule page
#39
mistrm82
closed
2 years ago
6
Cell group 1 has fewer than 3 cells
#38
abedkurdi
closed
3 years ago
0
Update marker ID to be log2 fc
#37
marypiper
closed
3 years ago
1
Add integration code to homework
#36
marypiper
closed
3 years ago
2
Revise the first day poll question
#35
jihe-liu
closed
3 years ago
0
Update to sctransform requires additional package install
#34
marypiper
closed
3 years ago
1
include the cycle.rda in the project download?
#33
mistrm82
closed
3 years ago
2
Update README.md
#32
mistrm82
closed
3 years ago
0
update the pre-clustering RData object link
#31
mistrm82
closed
3 years ago
2
add a"what's next?" markdown
#30
mistrm82
closed
1 month ago
2
Update 06_SC_SCT_normalization.md
#29
rkhetani
closed
3 years ago
0
Add note for subsetting datasets
#28
marypiper
closed
3 years ago
1
incorrect description of avg_logfc in markers lesson
#27
marypiper
closed
3 years ago
1
assess the effect of mito ratio?
#26
mistrm82
closed
3 years ago
2
are we normalizing too many times?
#25
mistrm82
closed
3 years ago
3
link to show an example of cell cycle regression
#24
mistrm82
closed
3 years ago
3
update homework for QC
#23
mistrm82
closed
3 years ago
1
Revise the explanation for default assay
#22
jihe-liu
closed
3 years ago
0
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