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hbctraining / variant_analysis

https://hbctraining.github.io/variant_analysis/
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-cancerSamples #13

Open Gammerdinger opened 6 months ago

Gammerdinger commented 6 months ago

In snpEff it looks like there is a -cancerSamples option so that we don't need to use bcftools to add the pedigree line:

-cancerSamples : Two column TXT file defining 'oringinal \t derived' samples.