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hbctraining / variant_analysis

https://hbctraining.github.io/variant_analysis/
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create an intro to variant calling md #3

Closed mistrm82 closed 6 months ago

mistrm82 commented 1 year ago

All advanced workshops begin with a markdown describing the technology. A bit of background on what it is and examples of its use. Also helpful would be considerations for when setting up a variant calling experiment

RNA-seq example and ChIP-seq example

mistrm82 commented 1 year ago

A helpful slide deck: https://biohpc.cornell.edu/lab/doc/Variant_workshop_part1.pdf

mistrm82 commented 1 year ago

sequencing depth considerations

mistrm82 commented 1 year ago

Some content can also be taken from this old slide deck: https://github.com/hbctraining/In-depth-NGS-Data-Analysis-Course/blob/master/sessionVI/slides/Variant_Intro_rsk.pdf

mistrm82 commented 1 year ago

cancer genomics: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5834793/