hci-unihd / antibodies-analysis-issues

Issue tracker for problems in the antibodies analysis workflow.
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Cell debris - titration_plate_20200403_154849 - E03-0008 #41

Open tischi opened 4 years ago

tischi commented 4 years ago

{"plateName":"titration_plate_20200403_154849","siteName":"E03-0008","pixelLocation":[8441.590078539715,13324.870432237436,0.0]}

Overall, cell segmentation looks really good!

Here would be one example, where debris was identified as cells. Rejecting some cell segments based on their too small size would help here.

In principle, this is of course more complex, because some of the "too small cells" may also be dying cells, which we should probably classify somehow, but then everything gets kind of too complex, for now.

Screenshot